YALI0B21925g

Overview

Description similar to uniprot|Q6CHR7 Yarrowia lipolytica YALI0A05929g
Locus type CDS
Locus tag YALI0B21925g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 2874100..2875919
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1820 (nuc.)
Previous locus YALI0B21912g Next locus YALI0B21978g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21925g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21925gYALI0B21925g_mRNA-001YALI0B21925g_CDS-001

Nucleotide sequence

 

>YALI0B21925g
CCAAGAACGTCTGTTAAGACAGCTGCAGCCGCAATAACACAAGGACTGCCTTCACCTTGA
CATGGAACTGAGTCAGAGGCTAACAAACTCCTGGTGGTGTGTTCTCTTCTGCTCTAAGTG
AAGGAAGAGCAGAAAGTGGTCTGGGAGGACATGAAGAAGATGATTGAGCAGTGGCCTCAG
ATCACGTTGCTCTATTATCGACAGCACCACTACCCGTTGCAGCTTCCAGGGAATAATCGC
AGTACAGAAGCTGCTTCAAGAGAACAACGAGTTCAACCAGAAATGGCGCGTGGAGAGAGG
AGGCTGCCAGGAGGCTGAAAGACTTCAAGCAATTTACATCCACAGTCATCAAAGCGTTTG
AGAGGTTAGATTCACACCTCGGACACCCTTCGTCGAGGAGTATATTTGGACTCTACTAAA
CATACATGCGTGGGCATCGAAGATGCTCTCTAGCCCTTCTCTGGACCTGCAAGAGAAGGC
AGAAAGTCAGCGATTACAGGCGCGGATATATGAGCTGCTCGAGGATCACGAGGCAAGCCT
GAGACGGTCTGTCTGGCTGGAGGCTGACAATTTTTCAAGGCATTTGGACAGGAAGGAGCC
GAAGTCTGCGGTTCCAGTGAGCTAAACACATGCTGACCGTGATCTGAAGCTTGAACTTGT
CAGGCGATTTCCCTGGATCAATCCAGAAGAAGAAATGAAGACCTGGGGAGGCTGTTAGTT
GGTGTACGTTTCACGACACCCCAGCTATAAGTTGAAAGTTATAAACGACTGGGATAAAAC
GAAATGCCACCACCCAAGCCGGTGAAGGGAGTTACTGCTTTGTGGCTCAATCATGGAGAG
AAGCTGCCCAGTGACTGCGAGGGGTTCGATGACCATCGGGAGTTCAACTACTCGTTCTCA
TGCGATCTATTTCATGCTGAAAACCTCCCACAGGGTGCAATGTTGAGTCCCTGGACTCTT
GAGGGCCCCCCCCCCCCCCCCTCCGCCCAAGCGGCCCAGTCAGATCAAGGGGGTTTCCAA
GAGTAAGAAGGCGATGGTCATCAGCTTTAAGGGCATTGAATTCACACTACCTGGTCAAAT
CCGTCCTGAACATCTTTCAAAGAATACCAGTTTTTCCTGGAACGAGCTGCCATTGTTGTC
AATAATGAGATCATTGTGATCCCCACTACTCACCACAACTACGCGTCCCCCAGAGACCAG
CATCATTACAAGCATCCTCCTCACATTGACGCTATTTCCCAAGTTGGAAATATTCACGTG
ACACGATACGCGAGAAGCACCTATGGCTTACACAACCCTCACACCTAGAAATTGGTCAGG
TATGGCACTCCCTCCTTTGCATAAACAAGTTGTGTCCCGAGGAAAACTACAATGGACTCG
TTTGGTTGTTTCATTAAGACCAGTGTCTGATTCCAACCTTCTTGGACCTGGACCAGCCCG
GAAAGATGTTTCGTAGGCAGGATAAAATCACCACCTTGCCTGACAAAGCACCAGATGGAC
TTCCTCACTGTCTTATACCCCAAAATTCGCAATATCTCACCGAGTGGACGAAAAGTGGAG
GTATTCGAATAGCAGATCTTGACAGCGGATTTATTTCTGATGTGGAAACTCCAGATTCAT
ACTATAACCCTGGAAGTGATCGAAGCAGAGTCTTTCTTGGGTATGAAAATGGCAAATTTC
TCGTCAGATTCTTGTCTCACCATGTTGTCCGTGGGTATATCAAGAGCTATTGGGATCTGG
ACTCTGAAGACCTGGACTTTGAAGCTTCAGAAAAAGAAGATGATGATGAAGATTACAAAG
ACTATGGTACCGGTGGTGAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21925g_CDS-001

Protein length: 527 aa.
Product: Pseudogene, C-term conserved in the Yarowia clade

>YALI0B21925g_CDS-001 PRTSVKTAAAAITQGLPSP*HGTESEANKLLVVCSLLL*VKEEQKVVWEDMKKMIEVASD
HVALLSTAPLPVAASREVQKLLQENNEFNQKWRVERGGCQEAERLQAIYIHSHQSV*EVR
FTPRTPFVEEYIWTLLNIHAWASKMLSSPSLDLQEKAESQRLQARIYELLEDHEASLRRS
VWLEADNFSRHLDRKEPKSAVPVS*THADRDLKLELVRRFPWINPEEEMKTWGGC*LVYV
SRHPSYKLKVINDWDKTKCHHPSR*RELLLCGSIMERSCPVTARGSMTIGSSTTRSHAIY
FMLKTSHRVQC*VPGLLRAPPPPPPPKRPSQIKGVSKSKKAMVISFKGIEFTLPGQIRPE
HLSKNTSFNKLCPEENYNGLVWLFH*DQCLIPTFLDLDQPGKMFRRQDKITTLPDKAPDG
LPHCLIPQNSQYLTEWTKSGGIRIADLDSGFISDVETPDSYYNPGSDRSRVFLGYENGKF
LVRFLSHHVVRGYIKSYWDLDSEDLDFEASEKEDDDEDYKDYGTGGE


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG