YALI0B21516g

Overview

Description similar to uniprot|P53759 Saccharomyces cerevisiae YML080w similarity to A.brasilense nifR3 protein
Locus type CDS
Locus tag YALI0B21516g

Location

Species Yarrowia lipolytica Positions 2821871..2823188
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1318 (nuc.)
Previous locus YALI0B21494g Next locus YALI0B21527g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21516g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21516gYALI0B21516g_mRNA-001YALI0B21516g_CDS-001

Nucleotide sequence

 

>YALI0B21516g
ATGACTGCTGCTTCTGCTTCCTCTGACGCGTCCGCCCCCACAAAGCTGGCTGGCCGTCAG
CTGTTTGAAAAACTTGGCAAGCCCAAGACCATTGTGGCTCCCATGGTTGATCAGAGTGAG
CTGGCCTGGCGAATTCTGTCCCGTCGACATGGCGCGGACCTCTGTTACACTCCTATGTTT
CACGCAAAGCTCTTCGGCACTTCTGAGCGATACAGAGAGGAGATGTTTGGACCCATGGAT
GGAGATCAGACGACTGATCGACCTCTGGTGGTCCAGTTTTGCGCAAACGACCCTGATGAG
CTGCTGGCTGCTGCCAAGCTAGTAGAGGATAGGTGTGACGCTGTGGATCTGAATCTGGGA
TGTCCTCAGGGCATTGCCCGAAAGGGCCACTACGGATCGTTTCTCATGGAGGACTGGGAT
CTGATCCACAAGCTCATCAACAAGCTGCACCTGGAGCTGAAGGTGCCCGTCACAGCCAAG
ATGCGAGTCTTTGACGACCGAGATAAGACCTTGGAATATGCCAAGATGATCATCAACGCC
GGTGCACAGTTTCTGACTATCCATGGCCGGACCCGAGAAATGAAGGGCCAGCAGACCGGT
CTGGCGGACTGGGAAATCATCAAGTACGTTCGGGAGAACCTGCCCAAGGACACTGTGGTC
TTTGCCAACGGCAACGTTCTGTACTCCGAAGATATCGAAAAGTGCATGGAGGAGACTACC
ACAGATGCTGTTATGTCTGCTGAAGGCAACTTGTACAACCCTGCCATCTTCAACAAGCCC
ACCGACAAGGATGTCAACTTTCCCCGAGTGGACAAGATGCTGCGGGAGTACTTTGAGATC
GTCAAAGAGACTCCTGGAAAGGCCTCCAACACTGCCATGAAGTCGCACTTCTTCAAAATT
CTGCATTCCTTCCTACCTGTGGAAACAGAGCTGCGAGCCGAGATTGGACGAACCTCCAAG
GCTGGCTTTGACGTGTGGGAGAAGATTGTTCAGAAGGTCGAGGAGAAGGTGGCTAAGATC
TATGAGGACCCCAACGTCAACGATGAGGTTGTTATTGGCGAGGAAGAGGCCTGGGGAGGA
GCCTACAGAACTGTGCCCTACTGGCGATGCCAGCCCTACTTCCGACGATGCAACGGAGAG
AAGGCCAACACCATGGTTTCCCGACAACAGAAGGAGGCTGCGGAGGCCAAGAAGAAGCGA
GAGGCCGAGAGTGGAGACGAGACCGACAAGGAGGACAAGGAGACCGATACCAAAAAGGCG
AAGCTGGAGTAAGTAGCACAAAATAATTTATTAACTCAATGATAACAACATTACGAGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21516g_CDS-001

Protein length: 424 aa.
Product: Dihydrouridine synthase, putative

>YALI0B21516g_CDS-001 MTAASASSDASAPTKLAGRQLFEKLGKPKTIVAPMVDQSELAWRILSRRHGADLCYTPMF
HAKLFGTSERYREEMFGPMDGDQTTDRPLVVQFCANDPDELLAAAKLVEDRCDAVDLNLG
CPQGIARKGHYGSFLMEDWDLIHKLINKLHLELKVPVTAKMRVFDDRDKTLEYAKMIINA
GAQFLTIHGRTREMKGQQTGLADWEIIKYVRENLPKDTVVFANGNVLYSEDIEKCMEETT
TDAVMSAEGNLYNPAIFNKPTDKDVNFPRVDKMLREYFEIVKETPGKASNTAMKSHFFKI
LHSFLPVETELRAEIGRTSKAGFDVWEKIVQKVEEKVAKIYEDPNVNDEVVIGEEEAWGG
AYRTVPYWRCQPYFRRCNGEKANTMVSRQQKEAAEAKKKREAESGDETDKEDKETDTKKA
KLE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG