YALI0B21494g

Overview

Description weakly similar to uniprot|B8ML91 Talaromyces stipitatus putative ribonuclease H
Locus type CDS
Locus tag YALI0B21494g

Location

Species Yarrowia lipolytica Positions 2819896..2821449
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 1554 (nuc.)
Previous locus YALI0B21472g Next locus YALI0B21516g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21494g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21494gYALI0B21494g_mRNA-001YALI0B21494g_CDS-001

Nucleotide sequence

 

>YALI0B21494g
ATGACCTACTCGACGCCAATCAATTTCAAGACTCCAGAAGGCTCTGAGATCGTTCTCCAG
GCCGCCAGAGAAGCTCTTTGTCCCCAGTTATGCCAACTGCAGGCTCAGTGCACGGACATT
GTCTTTTCTCATGAAGACAAGAACAGATTCAGAAACCGACTAAACAGCCTGGAAGAACTT
CACCCTTCTCCTAAGGTCGACCCATCTTCTAAGGAGACCGTCGTGCCTGTTCTCCGATGG
TTGTATCTCTTGGATCAGACCGTCAATGAAGCCATTACACCCTGTCGAGTCACTGAGCTG
TCCGCACCTTTCATCTGGCAGCAAGTTCAGCCTTGGCTTACCGAATCACTTGCTCGCGCG
CGTCTTCAGGCTGGTACCTGGATTCAAATGCGTGAACAACTTTTTGAATCTATCTTTGGC
TGGACAATCTCCGATTTTCTCTTCTTCGGAGACAAATCCGAACTACTTCCAGAGAAGTAC
GAAGACCCCCTTGAATGGCTTTATGTCGTCGGGTGGGTCTGTCTCCTGAGTGGAAACAAA
TCTGCCCTACAACCTTTTCTGGTCAAGGCGTCCTCTTTTACTGGCCTGGCTCAACTCAAA
CAGACCCTCGTCGACGCCTTCATGGTAAACAGGGATGATGCCGACGCGCTAAACGATTGG
AAAAATGATGTTTCTCTTGAATGGACCATGGCCGTATCTAAGAATTCCAGCCAGTTGAGT
CTGGTGAAGACGACATCTGGCAAGAAGTACTATGCTGTCGTGACCGGACGAAAACCCTGC
GTTTACGCCGACAAGCACATGGCTTATCACATGTCAATGCACCATCCAAATTGTGCTCCT
CTTGAGTTCGGCAGCGAAAAGGAGGCCTGGAACAAAGTGCGTTCTTTCGCCAAGGGATCG
CCGTTCAAGAAACGAGAGTCCACAATGACAGTGCATACAGACGGGGCCTGTCAGGGAGAA
AAGGCCGGGGCAGGAGTTTGGTTCCAGGATGGAAGCGAATTCAATTTCTCTGGTCCTGTT
GAAGGAAAACAGACAAGGGAAAGAGCCGAGCTTTATGCAGTCTTCCAGGCTTTGAGACTC
ATCTTTACTCATAGAGTCTACGACGCATACCGATGGGAAGTGGTAACGGACTCTCAATAC
GCCATCGACTGCATCACGAAAAAGGGAGACAAGTGGGAGAAGAACGGTTACGTGGACTCC
AAGGGTTGCCCAGTGGAAAACAGAGACCTCGTGGTTATCATCAGATACTTTGCGCGGGAA
TCAGAAAAGCTCTCTGGTTGCTACCACCAGATAATTTTCAAGCACACTCATTCTCGGAAC
CATGGAAACGAGTCTGCTAACAGACTGGCCACCAAGGGAATCGACGGGAAGTTATTTGTG
TGGCCAGAAGGACTTCATCACCCCCAGTGGGTTAACGACCAGAAGGCCATTTTCAGACGG
TACAGTTTTTAACCAGAACCTCAATTACATCTAATGTTCCTCCTCTATAGTATGTACATA
CATACATACCGGATCCGATAGGGCGTGCGCCGTCAATAGGTATCCCTCAACTTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21494g_CDS-001

Protein length: 484 aa.
Product: Conserved hypothetical protein

>YALI0B21494g_CDS-001 MTYSTPINFKTPEGSEIVLQAAREALCPQLCQLQAQCTDIVFSHEDKNRFRNRLNSLEEL
HPSPKVDPSSKETVVPVLRWLYLLDQTVNEAITPCRVTELSAPFIWQQVQPWLTESLARA
RLQAGTWIQMREQLFESIFGWTISDFLFFGDKSELLPEKYEDPLEWLYVVGWVCLLSGNK
SALQPFLVKASSFTGLAQLKQTLVDAFMVNRDDADALNDWKNDVSLEWTMAVSKNSSQLS
LVKTTSGKKYYAVVTGRKPCVYADKHMAYHMSMHHPNCAPLEFGSEKEAWNKVRSFAKGS
PFKKRESTMTVHTDGACQGEKAGAGVWFQDGSEFNFSGPVEGKQTRERAELYAVFQALRL
IFTHRVYDAYRWEVVTDSQYAIDCITKKGDKWEKNGYVDSKGCPVENRDLVVIIRYFARE
SEKLSGCYHQIIFKHTHSRNHGNESANRLATKGIDGKLFVWPEGLHHPQWVNDQKAIFRR
YSF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG