YALI0B20680g

Overview

Description similar to uniprot|O13939 Schizosaccharomyces pombe Probable beta-adaptin clatharin assembly protein
Locus type CDS
Locus tag YALI0B20680g

Location

Species Yarrowia lipolytica Positions 2722982..2725394
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 2413 (nuc.)
Previous locus YALI0B20658g Next locus YALI0B20702g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B20680g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B20680gYALI0B20680g_mRNA-001YALI0B20680g_CDS-001

Nucleotide sequence

 

>YALI0B20680g
ATGTCCGATCCGTTTGCGAAAATCGGAGCGGTGTTGGAGTCAGCCAAAGAGCTGACTCTT
GAAGCTGCAGTATCAGCATCATCACGACTTCTGGTAGACGACGCTCCCCTGTCAGCGGAG
GAAATCAAAAAGCTTCTTAATGCGCGCAGCGACCGTGACAGATTGGCGGGTATGCGCCAG
GTCATTGGTTTCATGTCCAAGGGCAGAGGAGAGGAAGCTCAGCAGTTCTTTCCGGACGTG
ATGCGAAACACGGCGTCCCAGTCTCTTGACATGCGCAAGCTCGTGTTTGTGTATCTGATC
CGTTACGCTCCCATGGAGCACGATCTGGCTCTTATGAGCGTCAACACCATTCAAAAGTCG
CTCTCTGATTCGTCTCCCACTGTCAGATCTCTCGGAGTCCGAGTTCTTAGCTCCCTGAGG
GTCCCGGCCATCTCAGGAATTGTTCTCTTTGCTATCAAGAAGGGTGTGACCGATGTTTCG
CCATTAGTCCGAAGAGCTGTCGCAGGAGCTATCGCCAAGTGCTACGACGTGGATCCTTCC
ACATTCCCACAGTTGGTCGAGTTCTTGCAGCAGCTGCTGGCCGACAAGAACGTTCATGTT
GTCGGGTCGGCTATCATGTCCATGCTTCTCATCTGCCCCGACCGCCTCGACCTCATCCAT
CCCATCTACAGGCGTCTCTGCAGAATCATCCCCCAGCTCGACACGTTCGCAGCAGCTTCC
GTCATTGATCTGCTAGTAAGATACAACCGTACCAATATTGCGCCACCAAAGGGCAACAAT
TCTGTCGACGCGGACACAGCTCTGCTTTTGTCGGCTCTTTATCCGGCCATTGAGAACTCA
TTGTCGCCTGTCTTCATCATGAGTGCAGTCAGTGCAGTCTACGCTCTATGCCCTGGACAA
GTCCAGCCGGTTTACCAGGAGACCATCGAGGTGGGACTCGTGAGATTGCTCAAGAATGAG
ACCTTGGAAGTCGCTCTGACCATGATCAAGCAAATTATTCTTCAGAGAGACCAACCCAAC
GCATTTTCCACCCATGTTCATCGGTTTGTGGTCTTTCCCGACGACACCGCGTCCGTGGCT
CTGCTAAAAATTGCCATCATGGCTTCAATCAAGGGCCCACGACAGTTTGTGTTGTCGGAA
CTCAAGCATTATGCTACCTCCACCTCTTACGAGCGCGAGGTTCAAGCAGCCGCTGTCTCG
GCCATTGGATCCTGCGCCTCTGGGGGAACTAACAAGGAGTCCGACTCTCTGGTCACGTGG
TTGCTTCGTCAGATTCGATCTGAAGCACCCACTTTGTCCGAGTGTCTTACCTGTGTGCGT
TTGTTGATTCAACAGCAGCCTCAGAAGCACGTCGCCACGGTGACTAAGCTGGCCAGAATT
TATACTACGCTTGACACATCGGCTGAGACATCTCCTGCTAAGGCTTCTGTGGTTTGGCTT
GTCTCCGAGTTCGTGTCTGTCGCCCCCGAAGTTGGAGAGGCTCTTCTTTACTCGGCATTA
AAAAACGTTGCATATGAGGACACACCTGTTCGAGCCCAGATTATGGATCTGGCTTCCAAG
GTGTACCTGTTCCGAATCAATGAGGTTGGCAAGGCAGCTGAAGGAGAACTCACTGAAGAA
AAACAGATTGAGTTTTCCAGGTCGTTTGTTGGACAGTTGTATTCGCACGCTCTCTACTGT
GGTCGATTTGATCCTTCATATGAGATCCGAGATAAGGTGCGACGTCTAGGAGCGTTACTC
AGCAATCCTGCATCTACTGAACTGGCTACCCTAATGCTCCAGGCTCCCAAGCAGGCTCCC
AAGGTGGACAGCACAAACACCGAGGGCGGTTTGGAGCTTAACACTGCTTCTGCGGTACTT
GGAACACCTCTTAGTGGGTATGTTTCCCTGCCTCCTTGGGAAAAGGATCTCTCTGTTCTT
CCTGATGCTCGTCTACGAGATGAACCTGAGGAGGTGGTTCACATGGACACCGAGAAGGTA
GTTACAGGTATCAGTCACAAGGAACTGCCGTCAATGTCTTCCAATGGTACTAATGGTATG
ACTGCCACCAAGCCCAAGCTGCAGAAGCAGACACTTGATGAGTTCTTCGCTGATACTGTT
GGGAGCGAAGACAGTAGCGAGGAGGAGGAATGCGACAGTGATGACGATGATGGTGAGGAG
GAAGACGAGGAGGAGAAAGACGAGGAGGAAGAAGACGAGGAGGAAGAAGACGAGGGGGAA
GAAGACGAAGAGGAGGAGGAAGACGAGAGCTCGGAAGAAGATTCATCTGACGACGATCAG
CCTGCTTCCCAATCTCCAGTCCCCGCTTCTCAGTCCCTTCTTCATGAAGAAAACCCGTTC
GCCAACAGCTAGTCTAGTTGGCAACAAAAAATATAGCATTTGTCTATAATGAATCATGAT
GTTTAAATACACA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B20680g_CDS-001

Protein length: 784 aa.
Product: Probable beta-adaptin clatharin assembly protein, putative

>YALI0B20680g_CDS-001 MSDPFAKIGAVLESAKELTLEAAVSASSRLLVDDAPLSAEEIKKLLNARSDRDRLAGMRQ
VIGFMSKGRGEEAQQFFPDVMRNTASQSLDMRKLVFVYLIRYAPMEHDLALMSVNTIQKS
LSDSSPTVRSLGVRVLSSLRVPAISGIVLFAIKKGVTDVSPLVRRAVAGAIAKCYDVDPS
TFPQLVEFLQQLLADKNVHVVGSAIMSMLLICPDRLDLIHPIYRRLCRIIPQLDTFAAAS
VIDLLVRYNRTNIAPPKGNNSVDADTALLLSALYPAIENSLSPVFIMSAVSAVYALCPGQ
VQPVYQETIEVGLVRLLKNETLEVALTMIKQIILQRDQPNAFSTHVHRFVVFPDDTASVA
LLKIAIMASIKGPRQFVLSELKHYATSTSYEREVQAAAVSAIGSCASGGTNKESDSLVTW
LLRQIRSEAPTLSECLTCVRLLIQQQPQKHVATVTKLARIYTTLDTSAETSPAKASVVWL
VSEFVSVAPEVGEALLYSALKNVAYEDTPVRAQIMDLASKVYLFRINEVGKAAEGELTEE
KQIEFSRSFVGQLYSHALYCGRFDPSYEIRDKVRRLGALLSNPASTELATLMLQAPKQAP
KVDSTNTEGGLELNTASAVLGTPLSGYVSLPPWEKDLSVLPDARLRDEPEEVVHMDTEKV
VTGISHKELPSMSSNGTNGMTATKPKLQKQTLDEFFADTVGSEDSSEEEECDSDDDDGEE
EDEEEKDEEEEDEEEEDEGEEDEEEEEDESSEEDSSDDDQPASQSPVPASQSLLHEENPF
ANS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG