YALI0B00968g

Overview

Description similar to uniprot|O13701 Schizosaccharomyces pombe Transcription initiation factor TFIID 55 kDa subunit (TAFII-55)
Locus type CDS
Locus tag YALI0B00968g

Location

Species Yarrowia lipolytica Positions 160979..162712
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 1734 (nuc.)
Previous locus YALI0B00946g Next locus YALI0B00990g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B00968g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B00968gYALI0B00968g_mRNA-001YALI0B00968g_CDS-001

Nucleotide sequence

 

>YALI0B00968g
ATGATCAAAATCAAGCTGAAGCCCGAAAAACGGTCGCCGGAGGCATCGCCGGAGAAGCGG
CGGACCAAGAAGCGCAAAACGGATGAGGAAGGGGCCAAACCGAGCACTCCGTCGCTCAGC
ATCAAGTTGAAGGCGCCCAAAAAAGAGCGGGAGTCCAAGCCGCGGTTGTCCCTGAAACTG
AGCAACAAAAAGAGCGAGAGCGCGGCGCCGGAAAGCAGCCGGGCGTCGACCGCGAGTGGC
GGATCCACTAAAAAGAGCAAGGTGGTGCCGCGGATCCGAGTCAAGGCCGCCCGCGAACCG
GGCCAGGGATACGACAGCGAAGCGCCGGACCGCGAAGACGATCCGCTGATTGAAGAGGGA
TTGATTTTGCGATTCCCACCAATCGGTAAAAGAGGCCGCGACGACCTGTCATATCTGCGG
ACGGCGGTGGAGAACCAGGATTACAGTAACATTGTGATTCGGTTCAAGGACTCGCGCAGG
GCGGTGGTTTCTGTGCGGGGGCGGCATTACGCGGCGAAATTGGTGGACTTGCCGGCGATC
GTCGAGGCCCAAAAGACGTTTGACCGCGGCAAAAACATGTTCAAGTGTCTGGACATTTGC
CAAATGTTACTTGTCACCGAGCCCATTTCGTCCGAACACAGCATTATGGAGGCGCGGTCG
ATGCAATGGGACAAGAGCTCCAGCGAAAGCGCGCTGACCTGTCGCCATGGCCTGACTCCG
CCGTTGTTTGACGCCAAACGTCGCCGATTCAGAAAAACCGTGTCCACAAAGGTGATTGAA
TCGGTGGAGCAAAAGGTGACGGACTTGCTGGATCTGGACGACGAGGCAGACTCCACATCA
TATGAGCTTGTCGATGGACGCACCCTGGCGTCCTTGTATGGAGCCGGTGGGGTTGCGGGC
TCGCAATCTGTGTCTACCACTGTTTCTGCCGCCGCCACTCCTCCTCCGCGGTTTGCCATG
GTCGACGAGGGAGAAATGGACGTGGATTTGCTCGATAAGGAGCTGGAGCGGGCCCTGGAG
GACCAAGGCTCGGATGAGGGCGAAGAAATCGAGGCCGATGATGCGTCCGAGTCCGAAGAT
GAGGGAGAAGGCGCAGGTGAGTCGGACAACTCGGACGAAGAGGAATTGCCCCGAGCGTCG
GCCGGAATGGACGATGACGACGACGGTGAAGAGGGAGGACACGCCAAGGTGCTGGTCGAC
ACGATTGCAGATCTGGAGGCGACCATCAAAAAGCAGCAGGACGACGCCGACCGCACCGCC
AACGCCATGCTCAAGGAGCGGTTCAACCAGCGAATCTCCAAGCTCAAACATGAGCTGGAG
GTCAAGAAGAAACAGCTCAAGGCAAAGAATACCATCAAGGAGAAGAAGAAGGAGATCGAT
AAGAAGGAAAAGAAGGAGGAGAAGGAGGAGAGTGAGGACAAGGTGGAAAAGGGCGAGGTC
AAGGACAAGGGTGTGGGCAGTGACGACGATATGGATTTGGATGATTTGTTTTAGCCGAGC
TCGGCAGGGTGGGAGTTGATATGGAGAAAATCCAGACCCGAATCTATTCCGTTCCACACC
AACGACAAAGTCCGATGGGTCCGCTCGTGGTCCGTTCACCAGAGGAGTCGACCTGTGAAC
TTCAGTCATCTCTCTACACTGCTTCGATATGCCACGGGACCTCCACCGTATGTCGTCTAA
CAACGGTCTGCATCGGTCTAATGAAATACAATAATTTATTCTGGTTCTGTACGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B00968g_CDS-001

Protein length: 498 aa.
Product: Transcription initiation factor TFIID 55 kDa subunit (TAFII-55), putative

>YALI0B00968g_CDS-001 MIKIKLKPEKRSPEASPEKRRTKKRKTDEEGAKPSTPSLSIKLKAPKKERESKPRLSLKL
SNKKSESAAPESSRASTASGGSTKKSKVVPRIRVKAAREPGQGYDSEAPDREDDPLIEEG
LILRFPPIGKRGRDDLSYLRTAVENQDYSNIVIRFKDSRRAVVSVRGRHYAAKLVDLPAI
VEAQKTFDRGKNMFKCLDICQMLLVTEPISSEHSIMEARSMQWDKSSSESALTCRHGLTP
PLFDAKRRRFRKTVSTKVIESVEQKVTDLLDLDDEADSTSYELVDGRTLASLYGAGGVAG
SQSVSTTVSAAATPPPRFAMVDEGEMDVDLLDKELERALEDQGSDEGEEIEADDASESED
EGEGAGESDNSDEEELPRASAGMDDDDDGEEGGHAKVLVDTIADLEATIKKQQDDADRTA
NAMLKERFNQRISKLKHELEVKKKQLKAKNTIKEKKKEIDKKEKKEEKEESEDKVEKGEV
KDKGVGSDDDMDLDDLF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG