YALI0F27797g

Overview

Description weakly similar to uniprot|G0RBE1 Trichoderma reesei predicted protein
Locus type CDS
Locus tag YALI0F27797g

Location

Species Yarrowia lipolytica Positions 3542522..3544433
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1912 (nuc.)
Previous locus YALI0F27775g Next locus YALI0F27819g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F27797g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F27797gYALI0F27797g_mRNA-001YALI0F27797g_CDS-001

Nucleotide sequence

 

>YALI0F27797g
ATGCTGCAAGAAGAAATCGATTCGCTTGTCTCCAAGTTCTCTAACTTGGATTCCTCGCTC
ATTACAGCTATTGCTCTGGACTGCGCTTCAGTTGAGGAGGCCGAGTCGATGTTAGAGCCT
CTCAACAATGAGTCAGCAGGAGCAGACCAGGTCTGTGAAGATTCTACGGACTTTCTTTCC
CACGACGGAACCGACTCCACGGGGAACACCACTGCTCAGACGTCGGTGGACGACTACAAG
GAGGCCCAGAGACTGCAACTGATTGAAAATTACCATGGGGACCATGATCGTATGAGACAG
GAGGAAACACAGACCCAGTCGCTTCGCAAGGAGATCGAAGACACCGATCTCGATCTGGAT
ACGTACATGACGATTCGACGCATGTTCCCTCACGTACCAGCTATCAAGATCAAACTCAGG
ATGAAAAAGTTTAGAGACGCGTCAGTGGAGGATCTGTTGGAATACTTCCTAAACTACGAC
ACTTTGAAGGAGGTGGCTCCAGAGCAGTTTGGAGCAAATGTGGAGGTGCTTACTATGGTA
ACAAACAACAAACGGAAACTCAGATCACGTGCCCAGGGAGATTCGAATCGTGTGAAACGA
GGTGCTGCCCTGGTACAACTTACCCCTCTCAGACGAGTTCCTTACTGGGATGACAATGGC
GAGTATGATGATCCGGGCGACTCTCAATGCTGGAAGATGTTCAATGGTGAAATTGAGAGG
ATCTCTTCGCTTCTGGATCTTCCTAAACAGAAGGTAGCAAAGTACTACTATGCATCAAAT
GTTAGCATCGCCAAGACCATCATTGCAATCTTAGCCGAAGCTCACGCTGACGAGATGACC
GACGAGGACAAGGAGTACGTGTATTTAAGCACTGACCGGTTCAAGAACGTGCCATTTGTG
TATCTGGAACGGTTGTACTTGTTTGTCAATAGAGATGAGGCTAAGTACAGCGAGGCAGCT
GGCATTATTGCTGCCTATGATGACAAATGGAACGACATGTTCAGTTTCCGGTTCGGTGGA
AGCGAGACTACAGAGTCCAGACCGATTGCTGAGGCCACTACTGCTCATGTGATTACGCAT
CAAACTCCTACAAGCACTGGAAACGAAAAGGTGACGATTGCTTTGACTGCTCCTGCGCCC
AGAGTGGATGAGGAGGAGGTTCGGGGTCCCATTACTGATGCTGATGGTTACCAACAAGTT
TCTGGACGTCGGTCTGCTCGTTTAAAGACTGTCAGTGAGCTCCAGGAGCTTGCCCAACGG
CTGGAAGAGACCCGAAAGTCGTACATGTACAAATCTACGACAAACCCGACTCTCAGAGGA
TACTACAGAGGTGCGATTGCTGAGCTTGAAGAGAAACGACGACAGGCTAGCACTGAAGCT
CGGTTGCTGCAGCAGCGGCGTACTGAGAGTGTCTACTTCACCGACTTGCATGGGCTGACC
GTCAATGAAGCCATGACTCTTGTGACCGACAAGATTGATGTTTGGTGGGATGTTGAGCGG
ATCAATTTCGAGAAGCAGGCGCCAGTGAAGATGTTGCATATCGTTACTGGAGCAGGTAAC
CATTCCCATAACGGTGTTCCTAAGATCAAGAACTCCCTCAGCATGTGGTTGAAGAGTCAC
GGGTGGAGTTTTCATAGCAATACTGCTTCACTAGACGTTATTGGAAGGAGGAAAACCAGG
GCCTGAGCTGTTGATTGGGATATATGTTTGGTTGATTGGAAAATGTGAGTTGGTGTCGTC
AATGTTGATGTAGACGAAGTACAGTACATACTGTACATACGGGAACTCATAGCCACTGCA
ACTAAAGTCAACCTATACAAATCAGAAAAACGCTCCAAACAAGGATGAATAAGAATGGTG
ACGCGGATGAATGTATATTAGACAGTAATGAAATGACATTATGATTTTGGAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F27797g_CDS-001

Protein length: 562 aa.
Product: Conserved hypothetical protein

>YALI0F27797g_CDS-001 MLQEEIDSLVSKFSNLDSSLITAIALDCASVEEAESMLEPLNNESAGADQVCEDSTDFLS
HDGTDSTGNTTAQTSVDDYKEAQRLQLIENYHGDHDRMRQEETQTQSLRKEIEDTDLDLD
TYMTIRRMFPHVPAIKIKLRMKKFRDASVEDLLEYFLNYDTLKEVAPEQFGANVEVLTMV
TNNKRKLRSRAQGDSNRVKRGAALVQLTPLRRVPYWDDNGEYDDPGDSQCWKMFNGEIER
ISSLLDLPKQKVAKYYYASNVSIAKTIIAILAEAHADEMTDEDKEYVYLSTDRFKNVPFV
YLERLYLFVNRDEAKYSEAAGIIAAYDDKWNDMFSFRFGGSETTESRPIAEATTAHVITH
QTPTSTGNEKVTIALTAPAPRVDEEEVRGPITDADGYQQVSGRRSARLKTVSELQELAQR
LEETRKSYMYKSTTNPTLRGYYRGAIAELEEKRRQASTEARLLQQRRTESVYFTDLHGLT
VNEAMTLVTDKIDVWWDVERINFEKQAPVKMLHIVTGAGNHSHNGVPKIKNSLSMWLKSH
GWSFHSNTASLDVIGRRKTRA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG