YALI0F21725g

Overview

Description similar to uniprot|P40010 Saccharomyces cerevisiae YER006w NUG1 GTPase that associates with nuclear 60S pre- ribosomes, required for export of 60S ribosomal subunits from the nucleus
Locus type CDS
Locus tag YALI0F21725g

Location

Species Yarrowia lipolytica Positions 2875875..2877457
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1583 (nuc.)
Previous locus YALI0F21703g Next locus YALI0F21747g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F21725g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F21725gYALI0F21725g_mRNA-001YALI0F21725g_CDS-001

Nucleotide sequence

 

>YALI0F21725g
ATGCCCAAACCAAAGGCCCCCACATCCAAGCGAACCTCTACTCGACTGAGAGAGGGTATC
AAGAAGAAGGCTGCCGCCCATGGTCGAAAACAGCGAAAGCTCGCCAAGAAGGACGTGACC
TGGAAGTCCAAAAACAAGAAGGATCTCGGTATCCCCAACTCCTTCCCCTACAAGGAGCAG
CTTTTGCAGCAGCTGGACGCACAGAAACAGGCCGAGGTGGCCGAGAAGGAGCGAAAGAAG
GAGGAAGCTCGACAGGCCCGAGCTGAGGCCCGGTCTCGAGGCGAGGACGTGCCTGATGAG
GAGGAATTTGAGGACAACCCCATGGCTGCTCTGTTGGCCAGTGCACGGGCTGCTGCCGAG
GAGTACGATGGCAGTGATGACGAGGACGAAGAGATGGAGAGCGAGGTTACGGAGCTGGAT
GTCAAGGTCAACCCTGGTGATGATGTGTTTAACGAGTCTTCGCGAAAGGCCTTCGACAAG
ATCTTCAAGACCGTTGTGGACCAGGCTGATGTCATTCTCTACGTTCTGGACTCTCGAGAT
CCCGAGGGAACCCGGTCTCGAGCTGTCGAATCTGCCATTCTGTCCAATCCCGACAAGCGA
CTTATTTTCATTCTTAACAAGGTTGATCTGATCCCTGCCGAGAACCTGCAGAACTGGGTC
AACACTCTGCGACTCACCTTCCCCACTTTGCCCCTGCGAGCTGCCAACTCCGGTCCCGTG
ACCGGCCGACAGCTCTGCAACAAAAACGTGACCCAGCAGTCCACCTCCACCGCTCTGCTG
GACGCCCTCAAAAAGTACGCTAAGGACTCGCAGCTTAAGCGGTCTGTCATTGTCGGAGTC
ATTGGCTACCCTAACGTTGGAAAGTCATCCATCATCAACGCTCTCACCAAGATCCATGGA
GGAGGACGAGCCTGTCCCGTCGGAGCCCAAGCCGGTGTCACTACCGCTCTTCGAGAGGTC
AAGATCGACAACAAGCTCAAGATTCTCGACTCTCCCGGTATCGTTTTCCCCTCCGAGAAG
GCCAACAAGGTGCAGGAGCAGGCCCGTCTCGTGCTCTTGAATGCAATTCCTGCTAAGCAG
ATGGTCGACCAGGTTCCCGCTGTCCAGCTGCTGCTCAAGCGACTCACCAACGACGAGTCT
CTGTTGCAGCAGTTCATGGAGCACTACTCTATCCCCCCTCTGTCGCACGCCAACTTCAAG
GACTTCACCACAAACGTGCTAATTCACGTGGCTCGAAAGACTGGCCGACTCGGCAAGGGA
GGAATCCCCAACCTCGAGGCTGCCTCCAAGAACATCATCAACGACTGGAGAGACGGGCGA
ATTCTCGGATGGACCCAGGCTCCCGAGTACACTGAGGCCCTTGCCGACGAGGAGAACCGA
CCTGGTATCTCGTCATCTAAGTCCCTCAAGGCTCCCGCCAAGCAGCAGGACACCAAGACT
GTGGTCCAGGAGTGGGCCAAGGAGTTTGATCTCGGCGGTCTGTGGACCCCAGGAGAGGAT
GACGAGGACGTGGACATGTAGGAGTGCAAAACGGAAAGTACACATGATATGTAATAGGTT
ATAGTATAGAGCATTGTTTGGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F21725g_CDS-001

Protein length: 507 aa.
Product: GTPase that associates with nuclear 60S pre- ribosomes, putative

>YALI0F21725g_CDS-001 MPKPKAPTSKRTSTRLREGIKKKAAAHGRKQRKLAKKDVTWKSKNKKDLGIPNSFPYKEQ
LLQQLDAQKQAEVAEKERKKEEARQARAEARSRGEDVPDEEEFEDNPMAALLASARAAAE
EYDGSDDEDEEMESEVTELDVKVNPGDDVFNESSRKAFDKIFKTVVDQADVILYVLDSRD
PEGTRSRAVESAILSNPDKRLIFILNKVDLIPAENLQNWVNTLRLTFPTLPLRAANSGPV
TGRQLCNKNVTQQSTSTALLDALKKYAKDSQLKRSVIVGVIGYPNVGKSSIINALTKIHG
GGRACPVGAQAGVTTALREVKIDNKLKILDSPGIVFPSEKANKVQEQARLVLLNAIPAKQ
MVDQVPAVQLLLKRLTNDESLLQQFMEHYSIPPLSHANFKDFTTNVLIHVARKTGRLGKG
GIPNLEAASKNIINDWRDGRILGWTQAPEYTEALADEENRPGISSSKSLKAPAKQQDTKT
VVQEWAKEFDLGGLWTPGEDDEDVDM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG