YALI0F20240g

Overview

Description similar to uniprot|P53256 Saccharomyces cerevisiae YGR095c RRP46 involved in rRNA processing
Locus type CDS
Locus tag YALI0F20240g

Location

Species Yarrowia lipolytica Positions 2696885..2697577
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 693 (nuc.)
Previous locus YALI0F20218g Next locus YALI0F20262g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F20240g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F20240gYALI0F20240g_mRNA-001YALI0F20240g_CDS-001

Nucleotide sequence

 

>YALI0F20240g
ATGAACATTTTGAACAATGTGGATGGATCTGCCAAATGGGAGCAAGGAACAAGTGTGATT
TGCTCGGTCACGGGTCCCATAGAAACTCGGCGACGGACAGATGAACCTACACTAGCTCAG
GTGGAGCTGGTGATTCGTCCTGCTATTGGACAGGCCACAACCCGGGAGACACTGATTAAG
GATCGAATCTACAGTGTTTTGGCCGCCACAGTGGTGCGAAACTTGTACCCTCGCATGTTG
CTTCAGATTGTGATTCAGATTCTTGAACAGGGTGAAGGAACCGGATACAACGTGCTCAAG
CTAGCGGCATGTCTGAACGCCGTGTGTCTGGCATTGATTGACAGCAGAACGCCCATGACT
GGTCTTTTTACAGCAGTCGCCATTGCCATTGTCGACGATAAGCTCATTTTGCATCCCACT
CGAAAACAGGTGTCTCAGTCGACGTCTACACATGCTGTTTCGTATTTCGTGGAGAACAAC
AAGGCCACGGGTCTGTTGATGTGTGAGAGTGAAGGTGAGTTCACCGAGAACCAACTGTTT
GAGGTGCTTGAGCAGGCCGCACGTGCATGTGAAGACGTGGCTCTGGATATGAGAGAGCGG
ATTGAGAAGGGTGTTAAGGAGGGCCTTCGAATTGATGCTGGGCAGGAGTAATGCATCGGT
AATTTATACCTATTAATGGATAGACATGAAAAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F20240g_CDS-001

Protein length: 217 aa.
Product: Exosome non-catalytic core component, putative

>YALI0F20240g_CDS-001 MNILNNVDGSAKWEQGTSVICSVTGPIETRRRTDEPTLAQVELVIRPAIGQATTRETLIK
DRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGTGYNVLKLAACLNAVCLALIDSRTPMT
GLFTAVAIAIVDDKLILHPTRKQVSQSTSTHAVSYFVENNKATGLLMCESEGEFTENQLF
EVLEQAARACEDVALDMRERIEKGVKEGLRIDAGQE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG