YALI0F18788g

Overview

Description weakly similar to uniprot|Q12224 Saccharomyces cerevisiae YPL089C (ohnolog of YBR182C) RLM1 transcription factor of the MADS box family
Locus type CDS
Locus tag YALI0F18788g

Location

Species Yarrowia lipolytica Positions 2507688..2509480
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1793 (nuc.)
Previous locus YALI0F18766g Next locus YALI0F18810g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F18788g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F18788gYALI0F18788g_mRNA-001YALI0F18788g_CDS-001

Nucleotide sequence

 

>YALI0F18788g
ATGGGACGTCGCAAGATTGTTATTCAACCGCTGGAAGACGAACGCAACCGTTCAGTGTGA
GTATTCTGGCATAGCCCGCGACATCAAGACACGCAAGAGGAGAAACAGATACACAAGTGG
AGAAAACAGGCACTTGATTAAGACATGTAACAGCGTTATTTCCATCGAGCGTGCTTGTCC
ACCACCTCCTTCTTCTCTGCACTATTCTTTCCTCGCCACCTACTTGTAGGACACAACTAA
CTCAGAACATTTCTCAAACGAAGAGCGGGACTGTTCAAAAAGGCCCACGAGCTGTCTGTG
CTTTGCCAGGTAGATATTGCCGTGATTGTCTTTGGCGCCAACCAGAAGCTGTATGAGTTC
TCGTCAACAGACACAAACCAGCTCATTCAAAGATACCAAAAGTCCATTCCCTACGAAAAG
AAGACGCCTGAGGACTACAATGGTAAAAAGCGGGCGGGCGGCCACAGAGCCACGGGAAGC
GTCACGAGCATCAAGAGCGAGCCCACCGATGAGGACGACGAAGAGGAGGAGGAGGATTCT
AACAACGGAACACAAAACGCCACCCCTCAGATGCCCCCCAACGTCACGCCACGGATGGCC
CAGAGCGTGACTCCGCAGATGCCTCAAAACGTGACACCTCAGCAGCAGCTGACTCCCCAG
CAGCAGGCTCAGCAGTCTCAGCAAGCCCAGCAGGTTCAACAGGCTCAGCAGCAGCAAATG
CCTCATCCCCACCACCCCGAGCAGCAGCGTTACTATGACTACATGAGCATGGGACAGATG
GGCCAGCATCCCCACCAGCAGCAGATTTTACAGCAACAGATGATGCAGCAACAACAGCAC
CATCATCAATTGCAGCAACAGGCACAACATGCTCAGCAGCACCAGCAGCATCAGCATCAA
CAGCATCAGAACCACCAACAGCAACAGCATCACAAGAGCCAATTCACCCCCATTTCGCAG
GAAATGAGCTCGTTGGCGGGCCACCTGTTGGACATTCGGCGTGGAACTAACGACATGCCA
CCTAGTTCTATCCCCGCAACCGCTGGAGGAAACCCTATGGGCCAGGGCGTGGCCGGGGCA
GGGAGCGGATACATTCCAGGATCCGAGGGCTCGTCACGGGTCTCGTCTCGACAGAACTCG
GTAACCAGGCCAAAACTCAAGGTTCAGATTCCGGGCGAGAAACGAGGCAGCACGGGAGGC
AACTCTGGACCTGGAGGTCAAGGCTCCACAGCAGGACAGGCAGGGAACTCCAGATCCACA
TCCGGGGAAGGCACACCGATAGATGGGTCCAAGGACGAAAACACCTCACACGCCGCGCTG
CTTTTACCACCACCCTCTCCCTCCTCGTACATTAATAACTCGGGAGTGGGCCCTGGAAAC
CCCTTTGCGAAACCCACGCTTCTGAATGGAGAACAAACGCCGTTGTCGGCAGCGTTACCA
TCGCGGTACATTAACGACCTGTTGCCCAGTCCGTCAAATTTCTACGGCACAGAGTGGAAC
TTCAACCCCGGGTCTGCAGGGGGCTCTTCCTTTTCTGCGGGAGGCTCCTTGATACCCACC
AGTGCCTGCAAAGATAAGAAGCGGGTGGATAACAGCGATAGTAAGTTGGACCCTAAGAAG
CAGAGGTTGGGGTGAGATGATGACATGACATGATGCGATGCGATTCGACGATGATGATTG
ATTATGATGATGATTAACTTGTTCCACGGACACAATGTGGCAATTTTTGGTATATAATAA
ACCCAGTTTGGGTACTAACACTCCTTGTACAATACATTCTAATAGTTTTGATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F18788g_CDS-001

Protein length: 482 aa.
Product: Conserved hypothetical protein

>YALI0F18788g_CDS-001 MGRRKIVIQPLEDERNRSVTFLKRRAGLFKKAHELSVLCQVDIAVIVFGANQKLYEFSST
DTNQLIQRYQKSIPYEKKTPEDYNGKKRAGGHRATGSVTSIKSEPTDEDDEEEEEDSNNG
TQNATPQMPPNVTPRMAQSVTPQMPQNVTPQQQLTPQQQAQQSQQAQQVQQAQQQQMPHP
HHPEQQRYYDYMSMGQMGQHPHQQQILQQQMMQQQQHHHQLQQQAQHAQQHQQHQHQQHQ
NHQQQQHHKSQFTPISQEMSSLAGHLLDIRRGTNDMPPSSIPATAGGNPMGQGVAGAGSG
YIPGSEGSSRVSSRQNSVTRPKLKVQIPGEKRGSTGGNSGPGGQGSTAGQAGNSRSTSGE
GTPIDGSKDENTSHAALLLPPPSPSSYINNSGVGPGNPFAKPTLLNGEQTPLSAALPSRY
INDLLPSPSNFYGTEWNFNPGSAGGSSFSAGGSLIPTSACKDKKRVDNSDSKLDPKKQRL
G*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG