YALI0F17028g - RIM23, PalC

Overview

Description uniprot|Q6C1E4 Yarrowia lipolytica YALI0F17028g RIM23/PalC Vps32p interactor required for ambient pH signalling
Locus type CDS
Gene names RIM23, PalC
Locus tag YALI0F17028g

Location

Species Yarrowia lipolytica Positions 2289665..2291109
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1445 (nuc.)
Previous locus YALI0F17006g Next locus YALI0F17050g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F17028g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F17028gYALI0F17028g_mRNA-001YALI0F17028g_CDS-001

Nucleotide sequence

 

>YALI0F17028g
ATGAGCATATCGTATACCGGCCAGCTGCCCACGACCAGCCCGTTGTCGCTGACTCAACTC
ATCACCTCAGACCGATACCAGCAGGTTATTGAGAATGCCGATGCTGCCCGGGCCCGAGTG
AGAGAACAGCTCAAACACGCCAAAAAGACAGGCGCCACAGAGGCGAATGGCGACATTATG
CCTGTGATCAAGGCTCTGGAGGAATATATGCCACACATTACCAGCATTGTCGACAACGAA
GGGGTGTTTCGATTCACGTCTCAGATCATCACTTGCTGGAGACTTCCGTTCCAGTCACAG
TCGTCAATGGCCAACAAGACGCCTCTGCATGGTCTCAGCTTCGAATATATCATGGTACTA
TTCACGTACGCTCTGGCTCTGGCTACCTTGGCCAACCAGTACGTGGCTAGAGATAAGGAG
GATCGATGGAAGCATGCCAGTGCATACATTAGTAAAGCTCGAGGCGTGGTAGACTATCTC
AGGCAGTGTCGAAGCTTCCAGATCATCTGCAACGAACCTCCAGCCTCGGTCCCTCGAGAC
CTCAGCTCAGCTACAATGTCGGCCCTTTCACACATGCTCTGTGGAGCGTCCCACATGCTC
ATTCTGTACAAGTGTGATGCAGAGACCTATCTGGATGGAGGAGCTCCGTCTGCAGGCGCA
AACTCGGGAGGGTTTTCAAGCTCGTTGTTACTTCGAACTGCAATCTTTGCCAGAGATCAG
TTTGAAACCGCTTCTGCCCTGCTGGGAGAACCAGTATCGAAACGCAAGCTGGTGACGAGT
CTAGTCAAGGAAAAGAGCTCCAAGTTCTCACTGTCAAAAAAGCTGCATTTAAGGAAGGAC
GATGGCTCCCCGAGTTTGGCGCCAGTGTCATCCTTTGAATCAAACAGAGACCTGTCGTCG
ACGTCTTCGGGAACTCTAGACTCGCTGCTTTCCTGGCTGAGCAGAGCACGAGGGGTGGCC
GAGGGATTCGTCTTCAAGCACATGGCTATTCAGGCGTATGAGAACAACCAGATTGGCAAG
GCTGTAGGCGCAGCTTATGCAGCCATTCTGCAACTGGAAGATGTCAAGATCCCTCAAAAG
TCTGCTCTTTATATTCCAGTGACCCATCTCAAGGAGACGCTGAACCGTCACCATGCCGAC
TACAAGGCTGACAATGATCGTCTATCGTTTGAGCCTGTTCCTTCGCCTTCAGAGCTTGCT
CAAGAGTGGCCCTCCGGTCGACAGGTGATTTCTGCTCAAAAGTGGACTCCACAAACAAGT
CTGGATCTTGGAGAGGACACTTCCTCCTCCGCACCCAAGTATTCTGGCCAGGGTTCCTAC
TACTAGCTACTTGTAGTTGTACTCCATCTGCACACACAGTCAACACACAATCCACAATCT
ACAAAACCAATCATTACCCACACTGTGACATGTAACATGATCAATACAATCAGTACTGTA
TGTGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F17028g_CDS-001

Protein length: 442 aa.
Product: Vps32p interactor required for ambient pH signalling
Gene: RIM23, PalC

>YALI0F17028g_CDS-001 MSISYTGQLPTTSPLSLTQLITSDRYQQVIENADAARARVREQLKHAKKTGATEANGDIM
PVIKALEEYMPHITSIVDNEGVFRFTSQIITCWRLPFQSQSSMANKTPLHGLSFEYIMVL
FTYALALATLANQYVARDKEDRWKHASAYISKARGVVDYLRQCRSFQIICNEPPASVPRD
LSSATMSALSHMLCGASHMLILYKCDAETYLDGGAPSAGANSGGFSSSLLLRTAIFARDQ
FETASALLGEPVSKRKLVTSLVKEKSSKFSLSKKLHLRKDDGSPSLAPVSSFESNRDLSS
TSSGTLDSLLSWLSRARGVAEGFVFKHMAIQAYENNQIGKAVGAAYAAILQLEDVKIPQK
SALYIPVTHLKETLNRHHADYKADNDRLSFEPVPSPSELAQEWPSGRQVISAQKWTPQTS
LDLGEDTSSSAPKYSGQGSYY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG