YALI0F12837g

Overview

Description some similarities with uniprot|P39730 Saccharomyces cerevisiae FUN12 YAL035W yIF2 GTPase
Locus type CDS
Locus tag YALI0F12837g

Location

Species Yarrowia lipolytica Positions 1722438..1726546
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 4109 (nuc.)
Previous locus YALI0F12826g Next locus YALI0F12859g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F12837g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F12837gYALI0F12837g_mRNA-001YALI0F12837g_CDS-001

Nucleotide sequence

 

>YALI0F12837g
ATGCACATGTCCACGTATTACACGTTTAACCATCAGCAGTTTCACCGTCACAAGCACCAG
CAGTACACAACATACACACACGCACACACACACACACAACGACACAAACCGACAATGAGT
GAAAACGAGTGAGTATAAATACACCGCCATCCGCCATATTGTGTCTAACACAGTCTGCAA
TCGTTTGCGCCTGTTGTGGGTCGAATGAAGTCAAAACGATGGGTTCAGGCCTCCGCCCCC
TCGTACGATGGAGACGACTGGGACGACGACTATTACAGTGGCGACGACGCGCCCGAGGTG
CCGGAGGTACCCAGTGAACACGTGGCGTCTATTGCTGAAGTGGACGAGGGTGTGGAAGAG
GCTCCTGAAGCGCCTCCGGTGATCAAACCCCTGGCATTGGGACGGGCGGGCCAGCAGCAG
AAGCTGGAGGAACAGCGGGAGCAGGAGCGGCTGCGAAAGCAGCAGGAGGCCGAGGCCGAG
GCTGAGGCCGAACGCCAGGCTGAGACCGAGCGCCAGGCTGAGCTGGAGAAGCAATACCAG
GCCAAGCTCGCCGAAGAGAAACGACAACGTGAACAGCTGGAGGAGTTGGAGCGGGAACAG
CAACGGATCCGGGAGGCCCGGGCGCGAGCCGAGGCTGAGACCAAGGCCAGAGACGAGGCT
GAAGCCAAGGCACGGGAGGAGGCTGAGGCGAAAGCTCGAGCTGAAGCTGAGGAGCAGGAT
CGACTGGAGCGAGAGGAGATTGAACGCGAATACCGAGAGCGCCAGGACGCCGAGAGGCAG
CGTCAGAAGCAGGAGGAGGCTGAGCGACTGGAGAGGGAGGAGGAGGAGCGACTGAGAAGG
GAGGAGGAGGAGCGCCAGGCCAAGATGGAGGAGGAGCGTCAGGCCAAGCTTGAAGCTGAA
CGACAGGCCAAGCTCGAGGAAGAGCGATTGGCCCGACTGGAGGCAGAGCGACAGGCTAAA
CTTGAGGCAGATCGACAGGCCAAGCTCGAGGCCGAGAAGGCACGCAAGGTCAAAATTGAA
AAGGCGCGAATCGAGGCTGAAAAACAGGCTGCGCGGGAAGCAGAGGAACGACGGCTCAAG
GAGGAGCAGCAACGACTGGCCGAGGAGGAGGAGAAGCGACAGGCGGAGGCGGAGGCCGCA
CGTGTTGCTGCTCTAGAGGCTGAGCTAGAAGCAGAGCGTGAGAAGGAGAGCAAGAGACAA
GAGGTCGTTCGCCAGGCCGAAAAGGAGCGTCTAGATGCTGAAAGAGAGGCGGAGTACCAA
TCCAAGCTGGAGGCGCGCGCCAAGGAGGCCGAAAAAGCCCGTCAGGCAGAGGAGGAGCAG
CGTGAGGCTGAACAGGCTCGTCTGGAGGCTGAACGCCATGCTCTGCTCATGTCAGCTGCT
GGGGAGGAAGGGGGAGATAAAACCAACTCTCCCACCACACAGTCGTTTTACGATTCCAGA
TCAAAGGGAGTCGGAAACGCTTCTGGAACTCCTGTGATGTCTCCCCGAGTGGATTATGAC
GACTTCCAAGCCACGGCTTCTCCCAACACCAGGGACCCCTACGATCCCAGTAATCATTGG
GGAGGTGGAGCTGTCACATCTGACTCTGCTGGGCGTGATGATGGTGGTTCTAACAACGGT
GTTGTTGGAGCCATTGGAGGGGCGATTGCAGGTGCTGCTGCTGCCGTGGGAGCTGCCACT
CTTGAGTCTAACAATGACTCTGAGAAGGATGGCAACAAGGAGGCTGATAAGAGTATTGAT
TCGTCTACTGGCTCAGAAGCACACACAGTCGGTCTTTCTAAGGAAGTGCTGGCTGCTCCT
TCGGAAGCAGATGCTTCCAACTCACTGAAACATGCATCAATGGTTGCTCAAGTGGGTGCA
GATGAGTCTGAAACACCCACCACGCTTCCTAGCAGCTCTGGTACTGCCACCTCCAAGAGT
ATGTCTCGTGTGGACTCTGTGGAGGACATTGTTGCTGACTACTATGCTTATAGCAGTGAT
GAGGGCGTTGAAGGAGAAGGAGTGGAGTACGATGAAGAGGGAGTTGAAGAAGGGTCCACT
ATGGATGGCCATAAAGATAAGGAGGAGGAGAAGGCCGACAAGAAAGATGCTGTCATAAAG
GACTCTTTGGATATTTCACCTGTCTCTTCCACTTCTCATTCTCACTATGCTGACGCCGAA
GATGTGGAGGCAGGATACACCATGGACGGAGTCAAGATGGAAGGATCTGATGGATCTGAC
AACGAGACTGACCATGAGACTGACGAGGACGACAAGAAGTTGTCCAAGCTCGACACTTCC
GGTGCTTCTGCTGTTCCCGACACTTCAGACGTGTCTACTCCCAAGCTTGACCAGGAACCC
TCTTCTGCTTCTACTGATATTGCTGGAAAACGAGAAATCCCTTCGCATCTCGTCCCCGGT
CTTACCGTGGGCACTGGAGGCAGTCCCCATGTGAAATCCACCTCGGAAATCACACCCACG
ACCGAGATGAACAAACTATCGGACGAGATTCTCAACTCGTTTTCGGCTGAAGGAAATGAC
CCTTACTACACCAACAGCGCGTACGATTATGACGATAGCGATGCTGGTCCCGATGCAGAG
CTACAGGCGCTATATGCCGGTTCGCACAAGTTTCTTGACGCGCGAATGTCGCGTGATATG
AGCGATGTGCACGGTGATTTTTCTGTGGCTCCTCTTTCTCCCAAACGGCTGTCTCGAGTG
GCCGTTGTAGACGAGTCTAACAGCTCGCCTAGTGTTGGTAAGGTGGCTGCGGTTGTGGGG
GCTGCTGGAGCCGTTGGAGTAGCCTCTGGTGTTGTTACAAGTGGTGGTGAGACTACTTCT
GCTTCCGCCACTCCTACCACTTCTGATGCTCCCAAATTCGAGGATGCTACCAAGGCCGTC
AAGGACGCCATGGAGGGAAACAAGGATCTAGAGTCGGATTTGCAAGCCAAACAGACGGAA
CCCCTTCCATCTCTGCCCTCTATTCCCGTTTCTTCTCTTGATCCGGGCACTCCCACTATT
CCGTCTTCGGAAGACAAGAGGGAGAAGGAGGGCAAGGAAGACAAGGACACCAAGGAGAAG
GACGATAATGACAACCGTGCATCCTCCCCCGAGCTTGACGAATTCGAAGACGCAGTGGAA
CGTATTTCTACAAACGACGAAAAACCCGATCGAACGAGCCACGACTCGGGCTACAAGTCG
ATGATTCTGGCTACTTCGCTCGAAAACGTGGCCACCACGCCCTCTGCAGGTGCCTCGTCG
CGTTCGGCGTCTCGAGGAGCAGGCATACTGGGCAAGCAGAGTAGCATCTCGTCCATGAAC
GCTCTAGGCAAAACGGACAGCTCGTCGTCGTCTGGTGTGCCTCCCACAGCCTCCTCGGCC
GTGCAGAATATCTTCCCTACTAATTCTGTCTCCACAGGTTCCCCTGCACAGGCTCCTGCC
TCGTTCGCCAAGCAGGCCACCACCACAGCTGTACTTCCGAAGGGACCAGCCATCACCACA
GCCCAGGTACGATCGGGCCCGTCGTACGACTTCCGGTCGATTCTGACGCGTCCTCGGTCC
ATCGATCGGGCCAACGCGTTCAATGACGCCCGAAAACGGGAGGCGGAGTACTCTCCCGGT
CTCGAGAGCTGGCTGGTGTTCACCTACAATGCTCTTAAGACGGACGCCGGCATCAGCGAC
ATGCAAACGTCGGGCTCATACTCTGGCGGCTCCAACAACCTGCCCAAGGCGTCATCCAAT
CTTCTGGCCGGCTCCATTGGCGACGTGTTCCAGAACCCTCTGTCGGGCATGTCTGGCGCC
ACCAAGGTGTCTGAAAAGTCGTCGCAGGTGTTCAACAAGGTGGGCGAGAGCACCACCAAG
CGAGCCCGGGGTCTGTTTGCAAAGTCCAAGAAGCTCATGAAGGGCGACAGATAGTTTATT
TAATGTTATTGCTGTTGTTATGGTTGAGTGCAGAGTGGGCGTAGGTCTTGCTCAACAGGA
TATCCCGGGTTAAGTTGATTAGTTGGACCCCATGGATTGTCAATTGAAGACAAAAGGGTT
GGGGTCTTGAGGACCGGACCCTCACCATTAGAGGAGCTTGTCAGCTGGGCGAAATAACTG
TTATAAGTTCAAAAAGTGAATGGCTATTC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F12837g_CDS-001

Protein length: 1283 aa.
Product: Conserved hypothetical protein

>YALI0F12837g_CDS-001 MHMSTYYTFNHQQFHRHKHQQYTTYTHAHTHTQRHKPTMSENDLQSFAPVVGRMKSKRWV
QASAPSYDGDDWDDDYYSGDDAPEVPEVPSEHVASIAEVDEGVEEAPEAPPVIKPLALGR
AGQQQKLEEQREQERLRKQQEAEAEAEAERQAETERQAELEKQYQAKLAEEKRQREQLEE
LEREQQRIREARARAEAETKARDEAEAKAREEAEAKARAEAEEQDRLEREEIEREYRERQ
DAERQRQKQEEAERLEREEEERLRREEEERQAKMEEERQAKLEAERQAKLEEERLARLEA
ERQAKLEADRQAKLEAEKARKVKIEKARIEAEKQAAREAEERRLKEEQQRLAEEEEKRQA
EAEAARVAALEAELEAEREKESKRQEVVRQAEKERLDAEREAEYQSKLEARAKEAEKARQ
AEEEQREAEQARLEAERHALLMSAAGEEGGDKTNSPTTQSFYDSRSKGVGNASGTPVMSP
RVDYDDFQATASPNTRDPYDPSNHWGGGAVTSDSAGRDDGGSNNGVVGAIGGAIAGAAAA
VGAATLESNNDSEKDGNKEADKSIDSSTGSEAHTVGLSKEVLAAPSEADASNSLKHASMV
AQVGADESETPTTLPSSSGTATSKSMSRVDSVEDIVADYYAYSSDEGVEGEGVEYDEEGV
EEGSTMDGHKDKEEEKADKKDAVIKDSLDISPVSSTSHSHYADAEDVEAGYTMDGVKMEG
SDGSDNETDHETDEDDKKLSKLDTSGASAVPDTSDVSTPKLDQEPSSASTDIAGKREIPS
HLVPGLTVGTGGSPHVKSTSEITPTTEMNKLSDEILNSFSAEGNDPYYTNSAYDYDDSDA
GPDAELQALYAGSHKFLDARMSRDMSDVHGDFSVAPLSPKRLSRVAVVDESNSSPSVGKV
AAVVGAAGAVGVASGVVTSGGETTSASATPTTSDAPKFEDATKAVKDAMEGNKDLESDLQ
AKQTEPLPSLPSIPVSSLDPGTPTIPSSEDKREKEGKEDKDTKEKDDNDNRASSPELDEF
EDAVERISTNDEKPDRTSHDSGYKSMILATSLENVATTPSAGASSRSASRGAGILGKQSS
ISSMNALGKTDSSSSSGVPPTASSAVQNIFPTNSVSTGSPAQAPASFAKQATTTAVLPKG
PAITTAQVRSGPSYDFRSILTRPRSIDRANAFNDARKREAEYSPGLESWLVFTYNALKTD
AGISDMQTSGSYSGGSNNLPKASSNLLAGSIGDVFQNPLSGMSGATKVSEKSSQVFNKVG
ESTTKRARGLFAKSKKLMKGDR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG