YALI0F05654g

Overview

Description some similarities with uniprot|Q8EAT4 Shewanella oneidensis
Locus type CDS
Locus tag YALI0F05654g

Location

Species Yarrowia lipolytica Positions 837511..839179
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1669 (nuc.)
Previous locus YALI0F05632g Next locus YALI0F05676g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F05654g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F05654gYALI0F05654g_mRNA-001YALI0F05654g_CDS-001

Nucleotide sequence

 

>YALI0F05654g
ATGACCGACAAGGGCAAGGAAATCGACACGGTGGAACAGGGCATTGCCGAACTCGACGTG
AACGGCAATGGCACCGTCACCGAAACCGTTACCGACACCATCACTGAAACCGAACCCACC
GAGACCGCCGACCAAACCGAACCCGCCACAGCTGAAAATACAAACAACACCTCGGAACCC
TTCAACCCCACTGCCGAAGCCATTGACAAGAGCGCCAAGCTCGCACAGGGTACAGCCGAG
CCCGAAGACTACCTTCCGGACGAGGCTCTGGCCGGAGCGGACCCCGACAAGCCCGAAAAC
GTGCCTGCGGACGCCCCGCTCAAGACCGACGGAGGCAAGCCCGTGGACATTGACCTGGTC
GAGCCCTCAAACCCCGCAGCAGCCGTGGTGGCCAAGGACATGCCCGAAATTGCTGCCGAG
GCCGACGCGGCGGTGGCCGACGAGGCTGCGGTGGTTGCGACCGAAAATGGTCTCCCCAAG
GCCCCCGACTCGCTGGTCTCCAAGGGCCTGCCCAACTTTGGAATCTTCCAGGGAGAGATT
AAGGACATGTCCTGGGACAGCCTCGAGGCCAAGCCCTACAACACAAAGTGGCACCACAAG
AAGTGGGAGTACGTTGGCATTGCCGCAGACGACTACTTCTTTGGTATTGCTGTGTGTCAT
GTCGGCTGGTCGTCCACGGCCTTTGCCTACATGTTTGACCGAAAGAAGGAAAAGGTCACC
AAGCACTACACCTCCAACGCTGTGCCTCTGCTGACCAAGTGCGAGATCCAGGACCGAGCG
TTTGGAAACGCTCTCTACTCTTCTCTGGGCAACAAGATCCAGTTCACCCGAGAGGGCGAC
GTGCTCAAGCTGTCCGTCGACGTCAAGAAGCTCGCCATTGAGGCCGAAATTGATCTCAAG
GGCGCGCCCATCCTGTGCTCCGTCGCTCGAGCCAACTGGATCGCCCACTCCACTCACAAG
ACCTCCGGTCTGCCCATCAAGGGCCACGTGCTCCTTAAGGAGCATCACAAGACCAAGGAC
CTAGAGTTTGATCTGCCCGAGAACGCCGTGGCCTCCCTGGACTCGTCCAACGGTCTGCTG
GCCCGAAACACCGAATGGCTCTGGGCCTCCGCTCACACCAAGGACCTCGGCTTCAACCTG
CAGCAGGGCTACATGGGCAAGAACGAGAACGCCATCTGGGTGGACGGCGACATCTACCCT
GTTGGAAACGCCATTTTCGAGTTTGACCGAAAGAACCCCTTGGGCGAGTGGAAGATCAAA
ACTGACGACGGCAAGGTTGATCTGACTTTCTACCCCGAGGGCGCTCGAGGCGAGGAGAAG
GATCTGGGTCTGGCTGCTTCCTACTACATCCAGCCCGTTGGTCTTTTCCGGGGCACTCTG
GAGCCCGTTGAGGGAGATCCCATCGAAATTGAGATTCTTGGTGTCACTGAGGATCATGAG
AGCAAGTGGTAAGACACCTAAACGAGAGAGCACAGCAGAGAGAAGCTCGAAAGTGACATC
TAAGAGTAGATACTCACTTTTGATGCTGAGATGACCCATATTTAATTTTATTGTAATTGT
ATGTGATGTATATTAGAAGATGCAGGCGTACCTGATATGCACCACGGCTGAACGAGTTGG
TGCTACAACACCTAGCAAAAAGTTCCATCTTTACATGTACATTAATTAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F05654g_CDS-001

Protein length: 484 aa.
Product: Conserved hypothetical protein

>YALI0F05654g_CDS-001 MTDKGKEIDTVEQGIAELDVNGNGTVTETVTDTITETEPTETADQTEPATAENTNNTSEP
FNPTAEAIDKSAKLAQGTAEPEDYLPDEALAGADPDKPENVPADAPLKTDGGKPVDIDLV
EPSNPAAAVVAKDMPEIAAEADAAVADEAAVVATENGLPKAPDSLVSKGLPNFGIFQGEI
KDMSWDSLEAKPYNTKWHHKKWEYVGIAADDYFFGIAVCHVGWSSTAFAYMFDRKKEKVT
KHYTSNAVPLLTKCEIQDRAFGNALYSSLGNKIQFTREGDVLKLSVDVKKLAIEAEIDLK
GAPILCSVARANWIAHSTHKTSGLPIKGHVLLKEHHKTKDLEFDLPENAVASLDSSNGLL
ARNTEWLWASAHTKDLGFNLQQGYMGKNENAIWVDGDIYPVGNAIFEFDRKNPLGEWKIK
TDDGKVDLTFYPEGARGEEKDLGLAASYYIQPVGLFRGTLEPVEGDPIEIEILGVTEDHE
SKW*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG