YALI0F05676g

Overview

Description highly similar to uniprot|P23248 Saccharomyces cerevisiae YML063W (ohnolog of YLR441C) Ribosomal protein of the small (40S) subunit
Locus type CDS
Locus tag YALI0F05676g

Location

Species Yarrowia lipolytica Positions 842275..843306
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1032 (nuc.)
Previous locus YALI0F05654g Next locus YALI0F05698g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F05676g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F05676gYALI0F05676g_mRNA-001YALI0F05676g_CDS-001

Nucleotide sequence

 

>YALI0F05676g
ATGGCTCAGGGAAAGAACAAGCGACTCTCTAAGTGAGTATTACAGCGGGCATGACGAGAA
TCGATTCGATTGGGGTAGATGTCGAGAGATGTGGACATAGGGTAGATGTCGAGTGATGGC
GACTGGACAACTCGGACGACGTGGACATTGACTTAAGACCCACTACCAACTTCCAACCTC
CAACCTCCAGTACTAACGCAGGGGAAAGAAGGGTATCAAGAAGCGAGTTGTCGACCCCTT
CACCAAGAAGGACTGGTACAACATCAAGGCTCCCTCCACCTTTGAGAACCGAGACGTCGG
CAAGACCCTCGTGAACCGATCCACCGGTCTGCGACTCGCCAACGACTACCTCAAGGGCCG
AGTGCTCGAGGTGTCCCTTGCTGATCTGCAGGGCCAGGAGGACCACTCCTTCAAGAAGGT
CAAGCTGCGAGTTGACGAGGTCCAGGGCAAGAACCTGCTCACCAACTTCCACGGCTTTGA
CTTCACTTCCGACAAGCTGCGATCTCTCGTCCGAAAGTGGCAGACTCTGATTGAGGCTAA
CGTCACCGTCAAGACCTCCGACGACTACTTCCTCCGACTCTTCGTCATCGGTTTCACCAA
GCGACAGGCCAACCAGGTCAAGAAGACCACCTACGCCCAGACCTCTCAGATCAACCAGAT
CCGAAAGAAGATGACCGACATTGTTGTCCGAGAGGCTTCCAACGTGACTCTTGCTCAGCT
CACCGCCAAGCTCATCCCCGAGGTTATTGGCCGAGAGATTGAGAAGGCCACTCAGAACAT
CTACCCTCTGCAGAACGTCTACATCCGAAAGGTCAAGCTGCTCAAGCAGCCCAAGTTCGA
CCTCGGAGCTCTGCTCGCTCTTCACGGAGGTGCCACCGACGACAACGGAAAGAAGGTCAA
CCGGGAGTTCAAGGATGTCGTTCTTGAGTCTGTTTAATGTGTAAAAGCATGTAAAATAAA
ATATTCATTGTACCGATCAAACAGCCATGAGCGAAGCCATGGCCGGTTACCTTATAAGAC
TGCTTGATTGTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F05676g_CDS-001

Protein length: 256 aa.
Product: Ribosomal 40S subunit protein S10, putative

>YALI0F05676g_CDS-001 MAQGKNKRLSKGKKGIKKRVVDPFTKKDWYNIKAPSTFENRDVGKTLVNRSTGLRLANDY
LKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTL
IEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVT
LAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNG
KKVNREFKDVVLESV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG