YALI0F04708g

Overview

Description similar to uniprot|P36080 Saccharomyces cerevisiae YKL082c RRP14 Ribosomal RNA Processing, constituent of 66S pre-ribosomal particles
Locus type CDS
Locus tag YALI0F04708g

Location

Species Yarrowia lipolytica Positions 730262..731828
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1567 (nuc.)
Previous locus YALI0F04686g Next locus YALI0F04730g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F04708g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F04708gYALI0F04708g_mRNA-001YALI0F04708g_CDS-001

Nucleotide sequence

 

>YALI0F04708g
ATGTCTCTAGAAGAACGATTACGAACACACACGAGCGCGTTTGACGGGCTTCTGTCGCTG
ATTCCGTCCAAGTATTATGAGGATGCCGGCGACGGCGACGACCAGTGGAGAAAGAAAAAG
CAGTCCAAGGAGGAGAAGCGCAAGGCCAAGCGGGCCAAGTTGGATCCTGGCAACCAGGTG
GCTTCACAGGCCAAGGATGTCCAGGATGCCAAGAACGAGCTCAAGGGCAAGGCTGTGATT
CCCACCAAGGAGAGCATCAAGGAGAAGATGGAGCAGTTCAATACGGTGGAGGGGATGGTT
GAGGAGCCCAAAGGCAAGAAGGGCGGCAAGAAGGGCGGCAAGAAGGAGGTGAAGGGCGAC
AACAACAAGCCCCAGGTCAACTCCAAGGGAGGCTCAAAGACTACCTCCAATGTCAGCACC
AAGGAGACGGATGTCAAGGCCGCCAACAGGAACACCAGCAGTAGCAACAAGAAGGAGACT
ACCAACGCCAAAGTCAACGGAAAGGAGTCTGAAGATGATAGTATCGAAGCAGCTCCTTTT
GCTGATCTTGTCGCTGAGTCTGTGACTGAGGAGACTGAGAAGGAGACCAAGGGTGAAGAT
GATGCTGCCGAAGCTGCCGCCAAGGAGGCCAGATTGGCCGCTCTGCGAGAAAAACTCAAC
AGCCGGATCCAGAATCTCCGGGCCGACCGAAAAGCGCCCGGCACAGATCCCAAAAAGGCG
CCCCAGAGCCGAGCCGAGATTCTCGCTGCCCGTCAGAAGGCCAAGGAGGCCCGCAAGGAG
AAAAAAAAGCTTGAGAGGGAGGAGAGAAGAAACCAGACCAACGACGGTGAGGATGAGGGT
GAGGAGGACGATGATGAAGAGGCCGATCAGTCCGACTCAGAGCCCAATCTGCTCTACTCT
CAGCTCCATTTCGAGACTGGCGAGTTCTCGTCTGATCTCAAGAACCTGACTTCCAAGAAA
CAAGGCACCAAACGAGACCTGCTGGGCCAGCTCAATCACGTTAAGGCCAAGCGGGCCAAG
CTGCAGGAGATGGATCTCGACAAGAAAAAGTCGGTCGAAAACGCCACGCTCTGGAACCGA
GCCATGCAGCACGCCAAGGGCGAAAAGGTGCGGGATAACGAAAAGTTGCTGACCAAGGCC
TTCAAGCGCCAGCAGCAGCAGAAACGCAAGTCCGAGCGCGAGTGGAACGACCGCCGATAC
ACCGTCGACAAGCATAAGCGAACCAAGGACAAGAAGCGAACGGAGAACCTGCAGGCCCGA
CGGGATTCCAAGAAGATCAAGGGCAAAAAGGTGAAGCCCGTCAAGAAGCCGTCGTCGGGG
AAGCGGGCGGGATTTGAGGGCAGATTGAAGTCCAAGTAATGAGGGAGAATCAGGTGGCAT
GGAGTGCTGAATGAACCAAGCGACCTGGTGGAGCAGTTTGCACAGTCACAAGTTGACTTT
CTTGGTACTAACAGACGGTAATCTCTCCTAGGAACTTCAACAGGTCCAAGTTCAAACAGG
TGTAATTGAGGAGGGTGTATAGATATATATGCATTGAATTGACATACAGTGAATAGATAC
TAGTAGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F04708g_CDS-001

Protein length: 453 aa.
Product: Constituent of 66S pre-ribosomal particles, putative

>YALI0F04708g_CDS-001 MSLEERLRTHTSAFDGLLSLIPSKYYEDAGDGDDQWRKKKQSKEEKRKAKRAKLDPGNQV
ASQAKDVQDAKNELKGKAVIPTKESIKEKMEQFNTVEGMVEEPKGKKGGKKGGKKEVKGD
NNKPQVNSKGGSKTTSNVSTKETDVKAANRNTSSSNKKETTNAKVNGKESEDDSIEAAPF
ADLVAESVTEETEKETKGEDDAAEAAAKEARLAALREKLNSRIQNLRADRKAPGTDPKKA
PQSRAEILAARQKAKEARKEKKKLEREERRNQTNDGEDEGEEDDDEEADQSDSEPNLLYS
QLHFETGEFSSDLKNLTSKKQGTKRDLLGQLNHVKAKRAKLQEMDLDKKKSVENATLWNR
AMQHAKGEKVRDNEKLLTKAFKRQQQQKRKSEREWNDRRYTVDKHKRTKDKKRTENLQAR
RDSKKIKGKKVKPVKKPSSGKRAGFEGRLKSK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG