YALI0F04125g

Overview

Description weakly similar to uniprot|P20795 Saccharomyces cerevisiae YLR396c VPS33 vacuolar sorting protein
Locus type CDS
Locus tag YALI0F04125g

Location

Species Yarrowia lipolytica Positions 626239..628348
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 2110 (nuc.)
Previous locus YALI0F04114g Next locus YALI0F04147g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F04125g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F04125gYALI0F04125g_mRNA-001YALI0F04125g_CDS-001

Nucleotide sequence

 

>YALI0F04125g
ATGTCCTCGCTATCGACTCTCCTAGATATTCTGGACTCGGTCCGCGGCAAAAAATACCTC
ATTCTGGACCGGTGTTTGGCGACGCAGATTTCGCTTTTGTGTCCGTTCTCAGTGCTGACT
GAGCACGGCGTGGACAAAATATTCTGGCTGCAGGACGAGGAGTCGCTGCCAAGCAACGAC
GTGGCGGTTCTGAACGGCGCCAAGATCGCCTACATTGTTGCGTCACGTGACCCGCGCAGC
GGGGCGATGTTGGCCAAGCACCAGCGGTCGGTGGCGGCCAATGTGGAGACCCACGTGATC
AGCGTTCCGCGGTCGCTTTCGTTGGAGGCTCTTCACCTCGATGTGTTCTATCATTCGTGG
GACATTCCATATGTGGCATTGGATCCTGATCTGTATACGTTGGGGCTGGGAGTTGTGGAT
CACGTGCCGCTGCTGACGCGGGAGGCGAAGCAGACGTTTCCGGGCGCGACTCCCGATTAT
GTCAGCGTGGAGCTGGCATCGCGGGCTCTGTTTGCACTCCAGCAGCAGTTTGGGTTTGCG
GGGCGGCTGTTAGCCCGCGGCAACGAGTCGTCGATGAGTCAACAGATCATTCGGCAGCTG
CAGCGGCTCAAGGACGATTTCGAGGTCGAGGCCGCTACTTCCGGGTCACGTGAGGCGCAG
TTTCTGCTGACCAACGACGCGCTGTTGGTTGGCGAAAAGGTGGAGCAGATCATTCTCATT
GATCGCCAAGACGATCCTCTGACGCCGCTTTTGAGTCAATTGACCTATTCTGGCCTTATT
GACGAGTTCTGGGGGCTTTCCGAGAACGGAAAAGTTGAAATTGAAGAGTTGATCCCATCC
CAGGTTACCGCATCCTCGTCTTCTTCGGCCCCGGTGTCTCAAATGTTTCTCAACGATACC
CTATATCGGGATTTGCGAGACATCAACTTTTCCTCGGTGGGGTCTCGTTTGAACGCCTGC
GCCACCTCTTTGCAGTCCGACTATGGCGAGAGACACAAGGCCAAGACGGTGAGTGAGATC
AAGTCGTTTGTGGGGCGTCTTTCCGGACTCACAGATCTCCACACCAACCTCAAGCTCCAC
ACCCATCTGTCAGAGCTCATTATGAAACGGCTTCAGAAACCAGAGTTCAACCGGGTGTTG
GAGATCCAGCAGAACCTGGTCGCCGACTCAATGGACTTGACCAAGTTGCACAACATGTTG
CAGGACTTGATTGGAGGCAACGCCGAGCTCGACACGGTGCTCCGACTGCTCTCGATCGAG
TCTCTGGTGAACGGCGGTATCAAGGAAAAGACCCTGACGTCCATCAAGAAGGAAATCTGC
CAGACGTATGGATACCAACATTTTCTCACATTCCAGAATCTCCAGAAAATGGGACTGGTG
GTCCCCAAACAAAACACCTCTTACTTTGGCTACAATGCCAAATCCCAGGACTTTGCGCTC
TCCACCTTCTCGGCAAACTTCTCCGCGCTCTCCAAATCTCTGGGCGTCATCTCGGACCAA
CAACAGGAGGTGGATGAGACCGATATCGCCTCCAGCTACTCGGGATACGCGCCCATTTCT
GTTCGCACCGTCCAGTGCGTTGTAGACAAGAAAAGCGTAATTTCCAGAGCAACAAAACAA
CAACTGGAGACGTACGAAAAGACGGGGGGCTGGGCAGGCGCGACGGAACTATTGCCAGGA
CTGCCGCTCATCGATTACAGCTACACCGATACCGCCAAGGACGGGAAAGAGGAAAACGAA
AAGAAGGTGAAAAACTTTCTGTCCCGTGACTTTGTCAAGAAGAAGACGTTTGTGTTTTTT
ATTGGCGGGGTCACGTGGGCCGAGATTAGCGCTCTGAGACTGTTGGGCAAGAGTGTCAAG
ACGGAATTGGTGGTGGTGGCCACGGGCGTGATCAATGGTAATGACTTGGTCAAGCCGGCT
TATTAATGGCGTGGCAAAACCGGATGTTGCGAGTCATACACCAACTGGTGTGAGCCCTTC
ACCTCCTCCCCATCCGTCCTCCTCCCCCCTCTCTCTCTCTCTCACCACCTACAGCCTATC
TGTATAATGTCTAAATAATGAATAATGAATCACGATTTTACCATCACGTGAAATCCCAAA
AATGGCGTCA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F04125g_CDS-001

Protein length: 642 aa.
Product: Conserved hypothetical protein

>YALI0F04125g_CDS-001 MSSLSTLLDILDSVRGKKYLILDRCLATQISLLCPFSVLTEHGVDKIFWLQDEESLPSND
VAVLNGAKIAYIVASRDPRSGAMLAKHQRSVAANVETHVISVPRSLSLEALHLDVFYHSW
DIPYVALDPDLYTLGLGVVDHVPLLTREAKQTFPGATPDYVSVELASRALFALQQQFGFA
GRLLARGNESSMSQQIIRQLQRLKDDFEVEAATSGSREAQFLLTNDALLVGEKVEQIILI
DRQDDPLTPLLSQLTYSGLIDEFWGLSENGKVEIEELIPSQVTASSSSSAPVSQMFLNDT
LYRDLRDINFSSVGSRLNACATSLQSDYGERHKAKTVSEIKSFVGRLSGLTDLHTNLKLH
THLSELIMKRLQKPEFNRVLEIQQNLVADSMDLTKLHNMLQDLIGGNAELDTVLRLLSIE
SLVNGGIKEKTLTSIKKEICQTYGYQHFLTFQNLQKMGLVVPKQNTSYFGYNAKSQDFAL
STFSANFSALSKSLGVISDQQQEVDETDIASSYSGYAPISVRTVQCVVDKKSVISRATKQ
QLETYEKTGGWAGATELLPGLPLIDYSYTDTAKDGKEENEKKVKNFLSRDFVKKKTFVFF
IGGVTWAEISALRLLGKSVKTELVVVATGVINGNDLVKPAY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG