YALI0E30393g

Overview

Description similar to uniprot|P40034 Saccharomyces cerevisiae YER051W JHD1 JmjC domain family histone demethylase specific for H3-K36
Locus type CDS
Locus tag YALI0E30393g

Location

Species Yarrowia lipolytica Positions 3581733..3583314
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1582 (nuc.)
Previous locus YALI0E30371g Next locus YALI0E30415g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E30393g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E30393gYALI0E30393g_mRNA-001YALI0E30393g_CDS-001

Nucleotide sequence

 

>YALI0E30393g
ATGCCCAACCGTTGCGACTTTTGTACCAGCAGTTCCACCAAGGATAAACAGCAGTGGACA
CAATGCGATGGCTGTGATAGATGGGTACATGACGTGTGCGTCAGCATAACAGACCCCGTA
TCCTACGCCAAGTACCATTGTCCAACATGCACGAAGACAAAGGGCCCATCCCTCTACAAA
CGTCAGTCTAAACGAAAGAAAATCGACATCGACTACGCGGCTATGCATTCTGGCAATGTT
GACATGAGTTTAAGAACTCGCCACGTCCACAGCTCGCGGTTTACAGACGTCGCTGCTTCA
GCGCAAAACAAGGAACCTTTCAAACGGGTTTCAGGCACAGAATTGACTTTGGATTGGGCA
CAGAGCTCAGATGGCCTCAATGAGCCTGTCATCGTTCCCAAAGAGTACAAGGACACCCTT
GGTATGTATATCCCAGAAGATCTTACCGTCAGACAAGTAGCGGAGGCTGTGGGTATGGAG
TCTCCTGTTGAGGTCATCAATGTGGTGTCTCAGAATGGATCTCCAGGATGGAACATGGGG
AAGTGGACAGAGTACTACGAAGATATTGAAGGTCGGGACACGATTCTCAATGTCATATCA
CTCGAGATCAGTGCCTCCGCGCTAGGCAAGACCATTGTTCGTCCTACCCTGGTCCGTGAA
CTGGATTTGGTGGATAGGGTATGGCCGACAAACACTGACGCTGCTAGGGAATCCAAACCT
CGAGTGTCTCTGTACGCCTTAATGAGCGTGGAGGACTCCTTCACAGACTTCCATATCGAC
TTTGCAGGCTCCTCTGTGTTCTACCATGTTCTCAAAGGGCGGAAATCTTTCATGTTCATT
CGACCAACAGCGCGAAACCTTGCAGCGTACTCCCAATGGTGTCTCTCCGCTGACCAGAAT
GTGGTATTTCTGCCTGATGTCTTGTCTCCTGACTCCGACATTTACACCGTTCATCTGTCG
CCTGGTGATACCATGTACATTCCATCTGGTTGGATCCACGCAGTTCATTCCCCTCAGGAC
TCTCTAGTGGTCGGTGGAAACTTCATCACTCCTCTAAACATGAAGACTCAGATTGATATC
GCTGGCATTGAGGTCAGAACGAAGGTTCCCATGAAGTTCAGATACCCGTTGTTTGCTGGT
GTCATGTGGTACTACGTGCTTCAGCTTTTGGCAAACCCCGAACGTCTTAACACTATGTCT
ACCAAGGAGCGTGATGGGTTAAATTCTGTAGCTGAATACCTTAGTGGATTCATCAAAACA
ATGTCCCCTACGATGAAGGATGTTCAATACCGACGCTTCGTTGCGAACTTTCCAATGGAG
ATTCGTCCGTTTCCTGGTAAGACCCTATTGGACTACTGTGCGATGTTAGACTTCTACCCC
AAAGGAGTTCAAGAAACTGTCGACATTGATATTAGGAAGAAGAAAGGAGAGTCAAAAGAG
AAACACAAGATCGAATCCCAATTACCTGAAGAGAAGATTTTACAAGGATCTAAACTGGAG
TCCAAGGAGGAAGTCCAGACTGAAAACTTCTGATCCTTTTCAGAATTGGAATATATTAAA
AGAATTACCAGTGTTGACGCTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E30393g_CDS-001

Protein length: 511 aa.
Product: JmjC domain family histone demethylase specific for H3-K36, putative

>YALI0E30393g_CDS-001 MPNRCDFCTSSSTKDKQQWTQCDGCDRWVHDVCVSITDPVSYAKYHCPTCTKTKGPSLYK
RQSKRKKIDIDYAAMHSGNVDMSLRTRHVHSSRFTDVAASAQNKEPFKRVSGTELTLDWA
QSSDGLNEPVIVPKEYKDTLGMYIPEDLTVRQVAEAVGMESPVEVINVVSQNGSPGWNMG
KWTEYYEDIEGRDTILNVISLEISASALGKTIVRPTLVRELDLVDRVWPTNTDAARESKP
RVSLYALMSVEDSFTDFHIDFAGSSVFYHVLKGRKSFMFIRPTARNLAAYSQWCLSADQN
VVFLPDVLSPDSDIYTVHLSPGDTMYIPSGWIHAVHSPQDSLVVGGNFITPLNMKTQIDI
AGIEVRTKVPMKFRYPLFAGVMWYYVLQLLANPERLNTMSTKERDGLNSVAEYLSGFIKT
MSPTMKDVQYRRFVANFPMEIRPFPGKTLLDYCAMLDFYPKGVQETVDIDIRKKKGESKE
KHKIESQLPEEKILQGSKLESKEEVQTENF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG