YALI0E16280g

Overview

Description weakly similar to uniprot|Q04177 Saccharomyces cerevisiae YDR398W snoRNA binding activity
Locus type CDS
Locus tag YALI0E16280g

Location

Species Yarrowia lipolytica Positions 1933736..1935717
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1982 (nuc.)
Previous locus YALI0E16258g Next locus YALI0E16294g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E16280g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E16280gYALI0E16280g_mRNA-001YALI0E16280g_CDS-001

Nucleotide sequence

 

>YALI0E16280g
ATGTCGGAACAGCTGTCTCGATTCGATCCCGCTCTCACGCAGTACGCCAGCGTCACTAGT
GCGCTTAACCAGCACAAGATCCGTGTCCAGGCGGTCTCAGGCGCCAATGCCAGTCTCCAG
CCCGTGGAGTTTGTGTTGGAGAAGGGCACCACTGTGACTGCTCTCAAGTGGACCAAGAAC
GTTGGCGAGGGCGCCTCGTCGTCTTCTCGACGCAAGAAGACCAAGACCCAGGACTCGGCG
GCTGCTTCTTCCGAGGAATATCTAGTTTCTGTGGGAACCAACCGGGGCGACATTCTCACT
TTTTCTCCCGCCCAGGCCAAGCTTGTGTCTGCTCTCCGAGGCGGCCATTCTCTGCCTGTG
GCCGACTTTGACGTCGACGCCAACTCCGGCACCACCTACTCTCTTGACAACCGAGGTCTT
TTGAACGTGTGGAAGGGCTCTTCTGTGGAGCGATCTGTGGACAAGACCGGCGCCAAGCTG
GTGGCCGTTCTGCCCTCGGGTAACGTGCTGCTGGCCACCCACAACATCGCCGTCTACGGC
CCCCGGGGGGATGACTCGTCGGCCGTCTCGTTTGACTCGGCTCTGTTTGATATCCCCTCG
CACACCTCTACTGTCACCGAGCTGTGTGTTCGAGGTGACCTTGTTGCTGCCGTTGCTGGC
GACCGTCTCATCAACGTGGTTAACGTGGCTCAGAAGAAAATTGTGCTGGTGCTCATGGCC
GAGTCGGGTGCCCACCGTGTCTCCATGAACGGCGACATTCTCACCGCCCTGACAGAGGGA
GGAGCCGCCGAGTTCTTCCAGCTCGCCCAGACTAACGGATCCACCCCCAACAGCAAGAAG
GGAAAGCGCAAGAGCATTGTCACCAAGTCCTCGTTTGCATCGCTGGACCTGGAACGGGGC
ACTAAGGCTGCCGGCCAGAACCTCGTCATCGACGCCATCGCGCTCACCGCCAAGGAGGCC
TACTACTCGTACACCGAGCGGGCCCAGGCCCAGTTTGCACACGTGACTCTGTCTGCCCTG
GAGACCGAGCCCACCATGACGGTGGTGCACGACCCCAAAAACGCCGCAAACCACTACACC
GAGGAGCGAACCGTGCCCGTGTCCTACAACGAGGAGGACGCTATCATTGCTGCTGGAGAC
GACTATTCACAGCTGGAGAACGGTGTAGGAAGCGACGAGTCCGATGACGACGAGTCTGCC
ACTCTGGCCGAAAAGATGGACGCTCTCAAGCGAGAAAACAAGACCACCAAGAGCGGACTT
TCCGGAACTGCTCCCCCGACCATGGGATCTCTATCCACTGTTCTTACCCAGGCCATCAAG
TCCGACGACGACGATCTGCTCGAGTCGTGTCTCCTTTTCCGAGACGAGGAGGGCATCAAG
TCTACCGTCCAGCGACTCAACAGTAATCTGGCCGTGCTACTTTTGGAGCGTTTGGCTGCC
AAGATGACCGCCCAACCCTCTAGAGGCCGACAGTTCAACGCCTGGATCAAGTGGGTCATG
GTGGCACATGGAGGATACCTGGTGACCGTGCCCAAGCTGCTGGTGACTGTGTCGCGACTT
CACAAGGCTCTTAATACCCGAGTCAACACACTGGATCGTCTGCTGGCTCTGGAGGGCCGT
CTGGAGATGCTTGAGGCCCAGATGGAACTGCGAAACGCCAGCCACGGCGCCAACGACGAC
GACGAGGAGTCCGACTCCGAGGTCGAGTTTGTCGAGGGCGAAGAGGACATTGACGAAGAC
GATGAGGAAGACGACATGTCCGAGATCATGGCCATGGGCGATGATGACGATGTCGAGATG
GGTGAGGGGGACGAAGGTGAGGATGATGAGGACGAGGACGAGGACGAAGACAGTGACGAA
GAGGACGAGGACGAGAACGAGATTGCTCTGCCTGACTCGGACGAGGAGGAGATGAAGCAG
GTGCTCAACAAGAAGCGAGGCAAGCAGTAAATAACTAGCATTATAGATTTGTATCATTGG
TT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E16280g_CDS-001

Protein length: 650 aa.
Product: Conserved hypothetical protein

>YALI0E16280g_CDS-001 MSEQLSRFDPALTQYASVTSALNQHKIRVQAVSGANASLQPVEFVLEKGTTVTALKWTKN
VGEGASSSSRRKKTKTQDSAAASSEEYLVSVGTNRGDILTFSPAQAKLVSALRGGHSLPV
ADFDVDANSGTTYSLDNRGLLNVWKGSSVERSVDKTGAKLVAVLPSGNVLLATHNIAVYG
PRGDDSSAVSFDSALFDIPSHTSTVTELCVRGDLVAAVAGDRLINVVNVAQKKIVLVLMA
ESGAHRVSMNGDILTALTEGGAAEFFQLAQTNGSTPNSKKGKRKSIVTKSSFASLDLERG
TKAAGQNLVIDAIALTAKEAYYSYTERAQAQFAHVTLSALETEPTMTVVHDPKNAANHYT
EERTVPVSYNEEDAIIAAGDDYSQLENGVGSDESDDDESATLAEKMDALKRENKTTKSGL
SGTAPPTMGSLSTVLTQAIKSDDDDLLESCLLFRDEEGIKSTVQRLNSNLAVLLLERLAA
KMTAQPSRGRQFNAWIKWVMVAHGGYLVTVPKLLVTVSRLHKALNTRVNTLDRLLALEGR
LEMLEAQMELRNASHGANDDDEESDSEVEFVEGEEDIDEDDEEDDMSEIMAMGDDDDVEM
GEGDEGEDDEDEDEDEDSDEEDEDENEIALPDSDEEEMKQVLNKKRGKQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG