YALI0E14058g

Overview

Description similar to uniprot|P38922 Saccharomyces cerevisiae HRB1 TOM34 YNL004W (ohnolog of YCL011C) Poly(A+) RNA- binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm
Locus type CDS
Locus tag YALI0E14058g

Location

Species Yarrowia lipolytica Positions 1693291..1695244
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1954 (nuc.)
Previous locus YALI0E14036g Next locus YALI0E14080g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E14058g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E14058gYALI0E14058g_mRNA-001YALI0E14058g_CDS-001

Nucleotide sequence

 

>YALI0E14058g
AGCAAAGTCATTCGTCACAGACACACCACACCACACCACCCATCGGCGACAACTTGTTAC
TTTTCTGAGCTACACGTGCAGAGCTACAGTTCATCGAATTGGAAGAAGGGCCGTGATATT
GAGAGCGAGAGAGAGCATTGCGCTAGGCATCAAGACGAAAATATTCAGAGTGATAATTGT
GGATTATTAGCACCAGTTTTTTGGCAGAAAAATAATCACGGAAACGCATATTGATTGAAT
TGGCTGTGTTTGGACTTTAGGGTATGTCTGGCAATGAGAACGATGGCTGAGAACATGTGA
CGTTCTTTCAGGAGAAGGGAAACAGGCAAGAATGGGAATCGACACATGGAAGGAAGTGCA
TCAACAGCAACTACTACAACACATGGCGTATGAGGATGGGGTTGTCCAACTCGACTTTGG
CAACTGCCACGCCCACGGCATCGATGGCGCAATGCCTTTGTGGCATCAATTGGTTGATTG
ATGTGCTCATGTGCTTCCGACCATGCTACCTACACCTACCCCTGTTTCTGTGCAAAACTA
CTTTTTTTTTCCATCCCAACAACTTAACTAACTCAGTATTCCCGATCACCCTATAGAAAC
AGATCCCGATCACCAGATCAGAGAAACAGATACTATCGAGACCACTCCAGATCTCGATCC
AGAAGTAAGTCGCCCCGAAGAGACTTCAACCCCCAGTTCCGAGACAGAGCTGGAAGCGGA
TCGTACCGACGAAACCGATCCCCACCAAGAAGAAATAGCGGACCCCCACAGATGCTTCAG
CAAGTGAAGGATTCCTCCCAACAAGACCGACGAGTCTACGTTGGAAACTTGGCCTACGAG
GTCAAGTGGCACCATCTCAAGGATTTCATGCGACAGGCCGGAAACGTGCTGTTTGCCGAC
GTCCTGCTCATGCCCAACGGCCGGTCCAAGGGCTGCGGTATTGTCGAGTACTCCACTCGA
GAAGAGGCTGAGAATGCCGTCAACACCCTCACCAACCAGGAGCTCATGGGCCGGGTTGTC
TACGTTCGAGAGGACCGAGAGAGCGAGCCCAAGTTCTCTCAGCCCAACCTGGGTCCCCCC
GGAGCCCGAGACGGTGGCCGAAGCGAGCGAGGCGGAGACTTTGGCGGCTCCCGACAGAGC
GGCGGTGGTGCTCCCGGCACCCAGCTGTTCGTTGGTAACCTGCCATACTCCACCGGATGG
CAGGATCTCAAGGACCTGTTCCGAGAGGCTGGTCAGATTGTCCGAGCCGACATTATGACC
TCTCACGATGGTCGATCCAAGGGCTCTGGTATTGTGCTGTTTGAGACCGCCGAGGACGCC
CACCGGGCTATCGAGCGGTTCAACGGCCACCAGATGGGCGGACGAGCCATTGAAGTTCGA
GAGGACCGATTTGCTGGTCCTCCTCGAGGCGGACCCCCTGCCCGAGTGGCACGAACCCCC
TTTGCTCCCGCACCACAGAACCCTCCCCGGGTTCCCTCCGAGTTCTCGGATGGAGCCATT
GGTGGCGGCGACCCCTCCGACACCATTTTTGTGGGCAACCTGCCCTGGTCCACCGCCGAC
CAGGATCTCTACGACCTGTTTGAGACCGTCGGCAAGGTGACCAAGGCCGAGATTCAGTTC
CTGCCCGATGGAAAGAAGGCAGGTAGCGGAGTTGTTCAGTTTGAGACTCCTGCTAGCGCC
GAGATCTCCATCGCCAAGTTTTCTGGCTACAACTACGGCCGACGAGATCTGGAGCTTTCT
TACGTTCGACGAACAGAGCCCCAGATCCCCAACGCCCCTGCCGCTTTCCACGAATAAGCA
CAAGGAACTGTTTTTATGTAATGAGTTATTATAGGAAGAGTGGAGCCTCCGTGAGTGGAG
CGCAAGTGAAAATGAGTTGTTATTACAGAGTAGGAGAGACTAGGTCATGTTGCATGCAGG
CTGAGATAAATTGAATATGATGCTGTGATCAGCG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E14058g_CDS-001

Protein length: 342 aa.
Product: Poly(A+) RNA-binding protein, putative

>YALI0E14058g_CDS-001 MLQQVKDSSQQDRRVYVGNLAYEVKWHHLKDFMRQAGNVLFADVLLMPNGRSKGCGIVEY
STREEAENAVNTLTNQELMGRVVYVREDRESEPKFSQPNLGPPGARDGGRSERGGDFGGS
RQSGGGAPGTQLFVGNLPYSTGWQDLKDLFREAGQIVRADIMTSHDGRSKGSGIVLFETA
EDAHRAIERFNGHQMGGRAIEVREDRFAGPPRGGPPARVARTPFAPAPQNPPRVPSEFSD
GAIGGGDPSDTIFVGNLPWSTADQDLYDLFETVGKVTKAEIQFLPDGKKAGSGVVQFETP
ASAEISIAKFSGYNYGRRDLELSYVRRTEPQIPNAPAAFHE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG