YALI0E13992g

Overview

Description highly similar to uniprot|P39968 Saccharomyces cerevisiae YEL013w VAC8 required for vacuole inheritance and protein targeting from the cytoplasm to vacuole
Locus type CDS
Locus tag YALI0E13992g

Location

Species Yarrowia lipolytica Positions 1684187..1686041
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1855 (nuc.)
Previous locus YALI0E13970g Next locus YALI0E14014g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E13992g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E13992gYALI0E13992g_mRNA-001YALI0E13992g_CDS-001

Nucleotide sequence

 

>YALI0E13992g
ATGGGTGTTTGTGCGAGCTGCTGTTCAGGTGAGTATCGTACACAGACAGAGAGCGGGTCT
TGCAAGGGCGAAGATGGCAGCAAGTGCTGCAGACAGAATGGGGCGACAGCGTATGTCTGG
TCTCTCTTGTTCAGCTCCCCCCCGCCCCACAGTCGTCACTAACCCAGGAAACAAACAGGA
CGGCAACTACGCGCCCGTGCTGGCCGAGGACGAACGGGAAGCCGTGGCTCTCCTGCTGCG
ATACCTCGAGAACCGAGGCGAAGTGGACTTTTTCTCCAACGGGCCCCTCCGAGCCCTCAG
CACTCTGGTCTACTCGGACAACATTGACCTGCAGCGAAGTGCCGCCCTCGCATTTGCAGA
AATTACAGAGAAGGACATCCGGCCCGTCAACCGAGACTGCCTCGAGCCCGTGCTGCTGCT
GTTGCAAAACACCGACCCCGACATCCAGCGAGCAGCCTCTGCTGCCCTGGGCAACCTCGC
CGTCAACAACGAAAACAAGGTGCTGATCGTCGAGATGGGCGGCTTCGAGCCCCTCATCCG
ACAGATGATGTCGCCCAACGTGGAGGTGCAGTGCAACGCCGTGGGATGCATAACCAACCT
GGCGACCCACGAGGCCAACAAATCCAAGATTGCTCGCTCCGGCGCTCTGCTGCCACTCAC
CAAGCTCGCCAAGTCTAAGGACATGCGAGTCCAGCGAAACGCCACTGGTGCCCTTCTCAA
CATGACCCACTCGGACCAGAATCGACAGGAGCTGGTCAACGCCGGCGCCATCCCCATTCT
GGTGTCATTGCTGTCGTCGCGAGACCCCGATGTGCAGTACTATTCGACCACCGCTCTTTC
CAACATTGCTGTGGACGAGTCCAACCGAAAGAAGCTGTCTAGCTCGGAGCCCCGGCTGGT
GGAGCATCTCATCAAGCTGATGGACTCCGGCTCTCCTCGGGTCCAGTGCCAGGCTGCTCT
TGCTCTGCGAAACCTCGCCAGCGACTCCGACTACCAGCTGGAGATTGTCAAGGCCAACGG
CCTCCCCCACCTGTTTAACTTATTCCAATCCACTCACACGCCGCTGGTTCTTGCGGCCGT
CGCTTGCATCCGAAACATCTCCATCCACCCTCTCAACGAGACCCCCATCATTGAGGCCGG
CTTCCTTAAGACGCTGGTGGAGCTGCTGGGCGCTAGCGACAACGAGGAGATTCAGTGCCA
CACAATCTCCACCTTACGAAATCTCGCTGCCAGCTCTGAGCGAAACAAGCTGGAGATTGT
CGAGGCCGGCGCCGTGCAGAAGTGCAAGGAGCTAGTGCTGGACGCTCCTCGACTGGTCCA
GAGCGAGATGACTGCATGCTTGGCTGTGCTCGCTCTCGGAGACGAGCTCAAGGGTACATT
GCTGGAGCTGGGAATCGCTGAGGTTCTGATTCCCCTCACCTTGTCGGACAACATTGAGGT
GCAGGGCAACAGTGCCGCTGCGCTTGGCAACCTGTCTTCCAAGGTGGGCAACTACGACAC
GTTTGTCAACCACTGGAACGAGCCCAGCGGAGGAATCCGGGAGTTTTTGATCCGGTTCCT
CACCAGCGGCGACTCTACGTTTGGCCACATTGCCGTGTGGACCGTGCTGCAGCTGCTGGA
GTCCAAGGACCAGCGTCTTAAGGATCTGCTCAAGAACTCCAATGAGATTGTCGATGCCAT
CCACCAGCTATCCAGCATGAACTCTGATGGGGCTGACGGCGATGGAGAGGACATGCGGGA
TTCCAAGAGCGAGGTTGTCATGTTGGCTAAAAAGGTGGCTCCTTTGCTCAAATAGTAGGA
TGCGATGATTTATTATATATGGAGAAGGAAGACAACTAATGTATTTGTAATCGGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E13992g_CDS-001

Protein length: 552 aa.
Product: Protein required for vacuole inheritance and protein targeting from the cytoplasm to vacuole, putative

>YALI0E13992g_CDS-001 MGVCASCCSGNKQDGNYAPVLAEDEREAVALLLRYLENRGEVDFFSNGPLRALSTLVYSD
NIDLQRSAALAFAEITEKDIRPVNRDCLEPVLLLLQNTDPDIQRAASAALGNLAVNNENK
VLIVEMGGFEPLIRQMMSPNVEVQCNAVGCITNLATHEANKSKIARSGALLPLTKLAKSK
DMRVQRNATGALLNMTHSDQNRQELVNAGAIPILVSLLSSRDPDVQYYSTTALSNIAVDE
SNRKKLSSSEPRLVEHLIKLMDSGSPRVQCQAALALRNLASDSDYQLEIVKANGLPHLFN
LFQSTHTPLVLAAVACIRNISIHPLNETPIIEAGFLKTLVELLGASDNEEIQCHTISTLR
NLAASSERNKLEIVEAGAVQKCKELVLDAPRLVQSEMTACLAVLALGDELKGTLLELGIA
EVLIPLTLSDNIEVQGNSAAALGNLSSKVGNYDTFVNHWNEPSGGIREFLIRFLTSGDST
FGHIAVWTVLQLLESKDQRLKDLLKNSNEIVDAIHQLSSMNSDGADGDGEDMRDSKSEVV
MLAKKVAPLLK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG