YALI0E13101g - SNF5

Overview

Description uniprot|Q6C625 Yarrowia lipolytica YALI0E13101g SNF5 Transcription factor component of SWI/SNF transcription activator complex
Locus type CDS
Gene name SNF5
Locus tag YALI0E13101g

Location

Species Yarrowia lipolytica Positions 1578234..1580642
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 2409 (nuc.)
Previous locus YALI0E13079g Next locus YALI0E13123g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E13101g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E13101gYALI0E13101g_mRNA-001YALI0E13101g_CDS-001

Nucleotide sequence

 

>YALI0E13101g
ATGTCGTTCCGGCAACAGTTCCAGCAGGGAGGCAATCCCAATGGACAGATGGGCTTCAAC
AACATGAACATGAGCCCAAACATGAACAACGCGAAAATCGGAGGCATGGATATGGGAGCG
CAGATGGGCCAGATGGGCCAGATGGGCCAGATGCCACAGATGGCTCAGATGGGCCAAATG
GGCCAGATGGGAGGCATGCCGCAAATGGGCGGACCCATGGGTGGCCAGATGAACGGCATG
AACATGGGTGGCATGTCCGGAGCAGGTGGCATGCCCAATGTCGGAGGGATGCCCAACATG
GCAGGAATGCCCAACATGGGTCAGGGTATGAACATGGGCCAAGGAATGAACCCCCAAGTT
GGTCGAGGTGGACCCATGGGACCTCAGGGTATGATGGGCCAGCAGGGCATGGGCGGCATG
CAGCAGGGTGGCCAGGTGCAGATGGGTGGAGGACCACAGATGCAACCCCCTCAGCGTCAG
CCACAGCCACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCATCACCACCAACAA
CAGCAGCAGCAGGTGCCTATGCCGCAATCGCAGCTCATCCCTCAGCAAGGAGGCATCCCC
GTCATGGCTGGAGGTCAACCCCAAAAGAACTTTGATTTCCCCCCACCAGGCCAGACCATG
ATGCAGCCCGGCCTCACTGTCCCTCCCGTGCAGTCACATCTGGGTCTTGTGAGTTCCGAT
GACGCCCGACAACAGGAGACACCTCTCGTGAACCCTCCCTCGGCTGCCGAGTCGCTCGCC
GAGATGCCCACGCTGTTCAACGGCCAGGGAATTACTGATCTCACAGAGATTATGAAAAAC
AAACGTGACCCCAAGACCGCCCAAGAACTCAACCTGCGTCGTTTTGTATCCAAGGATCTC
AACGAGTCCTCCACGCTGCCCAAAAAGCTCAAGCAGGAGGCCGACAAGCTCAACGCCAAG
CGATATGAGATCTCTTTCTACCACTCGTTTGGTCCCATTCGTTCGCAGGAGCCCCAGTCC
ATTTTTCAAGACGGATACCTCGGCTATGGCAATGGTTGGACAGGTCTCAACACACGGTTC
GTGTACCCCCGTGACCGAAAGAAACACAACCGAAACACCCGGGACCTGGTGCTGTCGCGT
CAGCAGATGAACCAGCAGGCGGCAGAACCGGAACTGCTGGTGCCCATTCGTCTTGACTTC
GATCTCGGACGACTTCGACTTAGAGACACCTTCATGTGGAACCTTAACGAGAAGACATAT
CCCGTGCACTTTTTCGTGGAGAACATGTTCGAGGACTTCCACTTCCCCCACCAGTACATT
CAGTCGGTCACAAACTCCATCACTGAACAGCTGCAGGATTTCCAGCCGCATCAGTACCCC
CAGGACCCTCGACACGTGATTGGCAACGGAGATGCGACCCGAAACGAAGACATGCGAGTT
GTGGTGCGCCTGGATATCACAGTTGGTCAGCACAATCTAATTGACCAGTTTGAGTGGGAC
ATCAACGATTCTCTCAACTCCCCAGAAGAGTTTGCTGCCACCATGTGTGCCGAGCTGTCT
CTGTCTGGAGAGTTTGCTACTGCTATTGCCCATGCCATCCATGAGCAGACACAGGTCTTT
TCAAAGTCGCTGTTGCTTCTTGGCCACACCTTTGATCAGCGACCTGTGGATGACGAGGAC
ATTCGACGTGAGATTTGCGCTCCCATACCCGATGGATCCGTCATGAGACCCAAGAACTCG
GTCAACGAGTACTCTCCTGCGCTGTTTGAGATTTCTGAGGCCGAGCTGAGTCGTCTGGAT
AAGGACAAGGACCGAGACTCTCGTCAGAAACGTCGACAGGGACGAGCCGGCAGACGAGGC
GCACCTTCTCTGCCCGATTTCAAGAAGGTTGTCCGAACGTTCCGAACTCCCGTTTACTCC
GCTGTGCTTCCTGGAGCTGTCGACCGAAAGGTGGAGTTGGCTAAACAGGCACTTCAGGCA
GAGGAGGAGGAAGAGGAAGAGGACAGTGATGGAAACGTTGTGGTGCGGCCTGCCAAGCGA
CAGCGAACCACCGGTAGACATGTTCCAGTGCGAGCTGCTGCTGCTAATGCCGCTGTGGCT
GTGGCTGCACAGAGCCAGGAGCTGGAAACCAACTATGTGGAGGAGCTGGCGGATCCTACT
TCATTCTGGGTCACTCTGAAGGTGCCCCCACAGCAGCTTGCGCGGCTGATGATGATTCCT
CGGTTTGGATAAGGGAGGGTAGAGGGAGTAGCTACCCGCAAAAGAGATTAGCTACAGCTA
ACTGTATATTAATAGATGTATGAGACAAAGCAGAAGTCTTTGGCTAGTCATGCGCCAGCC
AAAGGCTTGTGCTGATGGATAATGAAGGATATGTATCATATATAAGTATTTGATGGTAAT
TGAGGGTGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E13101g_CDS-001

Protein length: 744 aa.
Product: Transcription factor component of SWI/SNF transcription activator complex
Gene: SNF5

>YALI0E13101g_CDS-001 MSFRQQFQQGGNPNGQMGFNNMNMSPNMNNAKIGGMDMGAQMGQMGQMGQMPQMAQMGQM
GQMGGMPQMGGPMGGQMNGMNMGGMSGAGGMPNVGGMPNMAGMPNMGQGMNMGQGMNPQV
GRGGPMGPQGMMGQQGMGGMQQGGQVQMGGGPQMQPPQRQPQPQQQQQQQQQQQQHHHQQ
QQQQVPMPQSQLIPQQGGIPVMAGGQPQKNFDFPPPGQTMMQPGLTVPPVQSHLGLVSSD
DARQQETPLVNPPSAAESLAEMPTLFNGQGITDLTEIMKNKRDPKTAQELNLRRFVSKDL
NESSTLPKKLKQEADKLNAKRYEISFYHSFGPIRSQEPQSIFQDGYLGYGNGWTGLNTRF
VYPRDRKKHNRNTRDLVLSRQQMNQQAAEPELLVPIRLDFDLGRLRLRDTFMWNLNEKTY
PVHFFVENMFEDFHFPHQYIQSVTNSITEQLQDFQPHQYPQDPRHVIGNGDATRNEDMRV
VVRLDITVGQHNLIDQFEWDINDSLNSPEEFAATMCAELSLSGEFATAIAHAIHEQTQVF
SKSLLLLGHTFDQRPVDDEDIRREICAPIPDGSVMRPKNSVNEYSPALFEISEAELSRLD
KDKDRDSRQKRRQGRAGRRGAPSLPDFKKVVRTFRTPVYSAVLPGAVDRKVELAKQALQA
EEEEEEEDSDGNVVVRPAKRQRTTGRHVPVRAAAANAAVAVAAQSQELETNYVEELADPT
SFWVTLKVPPQQLARLMMIPRFG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG