YALI0D27280g

Overview

Description weakly similar to uniprot|Q4WQJ3 Aspergillus fumigatus CCCH zinc finger and SMR domain protein
Locus type CDS
Locus tag YALI0D27280g

Location

Species Yarrowia lipolytica Positions 3626127..3627962
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1836 (nuc.)
Previous locus YALI0D27258g Next locus YALI0D27302g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D27280g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D27280gYALI0D27280g_mRNA-001YALI0D27280g_CDS-001

Nucleotide sequence

 

>YALI0D27280g
ATGGACGAGTTGTCAAGGGAGGCAGATGCGATTCTAGATGATGACAGTGTCCTGGAGGAG
GACAAGATCGAGCTTTTGGAAGAGCTCGTGGTGAAACATCATGGAGAAATGTCTTCTAGC
GAACGGGAGAGCATGGTGCTGGATCTCATGTGGAAACATCGTGAGAAGGAGGGCTCGGTC
ACACGTCACCGCAATGGTCATGGAGATGTGCGGATTGTGGGTGTCGACAAGTCCAAGAGC
ATCGACTGGGTCAAAATCCCAGAGGTGCTTCCAGAAATCGACTGGTCCAAAGTTGTGGAC
GACTACAAGAAGCGAGGCAAGGCCGTTCCCTTACGGGATAAGCTGCCTGAGGACGAGGAG
GAGGTCTACTGGGAAGATTATGTGCCTGACAGTGAAGGTCATGTGGGGCATGGAGAGACC
GATCTGGCACCTTTTGATCTTCTTAGAGCCGTGCTTGGAGGCAATTACTCCGATGAACTG
ATCCAGAACACACTGGAGAAGCACAACTACGACATCAATGTGGTTATTGTGGTGCTACAA
AAGTACGACGACCGTTCAGGTTCTGAGCATGTGGAGGAAGAGGAGCAGGCCGCTCAGGTT
TACGAGATGGAACATCATCAGGAAGTACACGATTACAGCGGCTACAACAACTACGAGGAC
CCCAGCATGTACGAGGAAGAGTACGATGAGGACGAGAAAGAGGTCTATGCGGCACTGGCT
CTGTTGCCAGGAAGAGAGGAGAAGGTTCTCTGTAAGTACTTTGTGCAGTTTGGAGAGTGT
TTGCGGGCAGATTGCAGATATTCCCATGATCTGACATCACGTGTGTGTCGATTTTGGGTC
CGTGGCGCGTGCTTGAATGGCGAGACTTGTGCCTTCCTGCATTCCTTTCCAGAGACCGAG
TCTACTCCAGAGCCCACAAAGCCTCTGGAGAACTTCTCCAAGCCCATGCTTGACTCCTTG
GAAGATTTCCCCACTCTGGGAGGAGCAAGTGGAACAGCTAGTGACACAAAGTCCAAAAAA
AGGGAGAAGCCAGGTAGCAAATGGGCAGCTGTGGCCAGTTCTAATGACACACAAACTGTT
GCTGAGAAGCCCAAGAAGAGGTTTGATTTCAGCAAGGTGAAGCCTACTGAATCTTTTGTG
CCTGGTACTGCTGGTGTCCCTTCTTTTGTGCCTAAGGCATTCACTCCTACAGCACCTAGT
TTCACTCCTACCGCACCTAGTTTCACACCTGCCAAAATTTCGCCTGCCAAAGGACCGGCA
GCTCGCATGGCTGTGCAAAAACACAACCCTCTGACTCTTCTTCGACCAGAATTCACTCCC
TGGGTCGAGAACCCTCACCAGCTGGACGAACCTATTCAGGAGTACCTGCAGCTTCGAAAG
GAGAGCAGAAAGCATATTGAGATGCGAAACAAGTATCTCAACCTTTCTGCCGATAACTGG
CATATGAACCGACCTGATGCTGCCAAGATATACTCTAACAAGGGTCAGAAGCACCAGCAG
GAACTCATTGCAGCCAGTAGAAAGGCCTCTGACATTCTCTACAATTACCGAGATGACCTT
GGAGAGATCTTCTGTGACCTTCATGGGCTTGAGCTTGATACCAGTGTCATGCATCTGGAG
AACATTCTTCTGGGAGTCGAGGAGCAGTACAGAAAGAATAAAAAGCTGGTGTATGCGATC
TCTGGTGTGGGTTACCATGTTGTTTCCAAAACAGACATGTTGACCAAGGAGGTGAAGGCC
TGGCTGGACGAGTGGGGCTATGAATACAAGGTTTTTTTCATTGGCAACGAGAAATTCGGA
ACCGTCATTGCCATCGATCCTTGGTCCCATATCTAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D27280g_CDS-001

Protein length: 612 aa.
Product: Conserved hypothetical protein

>YALI0D27280g_CDS-001 MDELSREADAILDDDSVLEEDKIELLEELVVKHHGEMSSSERESMVLDLMWKHREKEGSV
TRHRNGHGDVRIVGVDKSKSIDWVKIPEVLPEIDWSKVVDDYKKRGKAVPLRDKLPEDEE
EVYWEDYVPDSEGHVGHGETDLAPFDLLRAVLGGNYSDELIQNTLEKHNYDINVVIVVLQ
KYDDRSGSEHVEEEEQAAQVYEMEHHQEVHDYSGYNNYEDPSMYEEEYDEDEKEVYAALA
LLPGREEKVLCKYFVQFGECLRADCRYSHDLTSRVCRFWVRGACLNGETCAFLHSFPETE
STPEPTKPLENFSKPMLDSLEDFPTLGGASGTASDTKSKKREKPGSKWAAVASSNDTQTV
AEKPKKRFDFSKVKPTESFVPGTAGVPSFVPKAFTPTAPSFTPTAPSFTPAKISPAKGPA
ARMAVQKHNPLTLLRPEFTPWVENPHQLDEPIQEYLQLRKESRKHIEMRNKYLNLSADNW
HMNRPDAAKIYSNKGQKHQQELIAASRKASDILYNYRDDLGEIFCDLHGLELDTSVMHLE
NILLGVEEQYRKNKKLVYAISGVGYHVVSKTDMLTKEVKAWLDEWGYEYKVFFIGNEKFG
TVIAIDPWSHI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG