YALI0D27258g

Overview

Description some similarities with uniprot|Q06337 Saccharomyces cerevisiae YDR359c VID21 weak similarity to human trichohyalin
Locus type CDS
Locus tag YALI0D27258g

Location

Species Yarrowia lipolytica Positions 3622721..3625699
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2979 (nuc.)
Previous locus YALI0D27236g Next locus YALI0D27280g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D27258g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D27258gYALI0D27258g_mRNA-001YALI0D27258g_CDS-001

Nucleotide sequence

 

>YALI0D27258g
ATGATGGACCCGCGGCAAGAGACGTGCGGAGACATTGTGTCGACGCGTAAACGTCGGCTT
GAAGAGCTATACTACGTCTCCTTGCACCCTCGGTACCCCCAAGGTCTGGATGCCAAACAG
AAACTGAAGCAGTTCCAGGACCAGTTCGACCTGACACAAAACCGACTTTTCGACGAAAAC
AAATTACCAAAGGCGGTCGAAGAGCCCAAGCCAGTGCCGACCCTTCAAACCTCGACACCT
GATGCAGGCTCTTCTCCAGAGTTGAAGCGACGACGTACGTCTAGTATTGCGCAACTGTCA
CCTACATTCTCACGCACATCACTCAAAACAAACGAGCAGCAACTGCAGGAAATGCTGCTG
TTTCTGGTGCCCAGCAACATCCCCGAACCCACCACAGAAACCAAGTCGCTCGCTGAGCTA
TACTACACCACACAGACCCTACCACTGTCCAAGCTTATTCCGTCGGCGCACAAAACACTT
ACCACAGACTCCTACCATCTGGCGTTGCTGGAGGGCAAGCTTGCAGTAGCACATGCTCGT
ATAGAGGAGCTGAAGCGGGCAGGGAAATGGGGCCCCAGGCAGCCAAAGCGGTTCCAGGAC
CCTATCCGACGGAAAACACACTGGGACCATGTGTTAGATGAAATGGAGTGGATGTCTACG
GATTTCCGGGAGGAGAGAAAATTCAAGCAGGCGATGGCTTGTGAAATTGCCTTTTCCGTG
CTGGAGTACCACAAGTACGGTAAGGAAGCTTGTTGTGTGAAGACGAAGCCTATCAAGTTC
CTACCAGAGGAAATTAACGAGTCTGAAGATACAGAGAGCAAGATGGACATTGATACAAGC
ATGCCACCACCAAGTATCAACCCTGTTGAGGTGACAAACATCTCAGCAGCGGATTCTGTC
ACTGTTGTTGACTACGATACTCTCCTCTCACAACCCAGGACACTGTCATCGACTGAGGAG
TCTGAAGACAAGCCGGAAGAGCCTTCTACAGACAGTGAAGAGGTCGTCGGTGGGGAGGTG
CCCAAGCGACCTGCTGCTCCTAAACTTCCTGAGAGCTCTCCGTTCAAGCTGTACGCCTCA
GTGGACAAGCTGGACCCTCTATCCAAGGCTCTCTTTGACAACCTCCCTGTCACTACACCT
CCTGGTTCTGCCGTTAATGCTCTACAGGTTCCCTACAGCGATCCTCTGGACAACTCAAAA
CTCGCACCTGTCACGCATCTTCTAGCGGCTCCCCCGGAGCAAGATGATTGGTGGTCGGTA
TGTCTTGAAGACTCTCCTGCCGATGAGGACCCTCTCCCTCTACGATCTAACACTCGTTCT
ACACTGTTCAATTCGGAGACCATGCGCCGACATGTCGTCATTAAGGCGCCGCAGCCTCCA
CAGACCAAGTACCTCGACTTCCGAACGCCAACAATGTGGTTATTGGCTGATGATTCACAG
CTTCTTCGACTGGTCAAGGAGTATTCCTACAACTGGGACATTGTGTCTGCCCACATGCTG
CCCCAAAAAACTTACGGCTTCACAGCTAACATTGAGAGACGTACGTCATGGCAGTGCTTC
GAGCGTTGGTTCCAGCTCAATCCGACGTTTTCTCTGACGGATTTGCGTGGTCCCTACGCT
CAGGCTGCCCAGCAATGGATGGCCGCTGCTGCCAAAGCCCAGGCTCAGTCCAAGCGTCGC
ATCTCGCCTCTTGGTGTGTCGAATGAGTCTATCCAGAGAGGTCACCGGAAGCTGCGATGG
GCTTCCATGTTTGACGGTATTCGAAAGAGCATGCGAAAACGAGAAACTACCCCCCGACCT
AACCCTCAGCCGCCTCGAAAGTCGCAGCTATCCGAGTCCAACAAGAAAGATATTGCTTCG
CCTCTGGATCTGTGCAAGATGAAGTTTGAGCAGGATAAGAATCTCGCCAAGGCTTACGCT
CAGCAGCGGATGATGCCTGGTCAGATGCCTGGTCAGATGCCCCCGGTACCTTCTAACATT
CCTGCTAACCGTCAGTTCCCCGGTCAACGACCTCCTCCTCCTCAGACCGCGGCTCAAATT
CAGGCACACACGCAGGCACAGGCTCGAGCTGCTGCTGCCGCCTCTGGACATATGCAGCAG
CGTATGGCTGGTGTGGGCATGAACAGAATGCCTGGCCAGATGAACGACCAGCACCAGATG
ATGCAGTTTGATCGACAGCGGCAGCTCATGGAGCAGCAGAAGATGCTGCAACAACAGCAG
CAGCAGCAGTTTATGCGAACCCAGGGACAGGTGCCTCCTCAGCCAGGCCAGGTGCAGGGA
CAGGTGAACCAGAACGTCCAGGGCGCTCAGGTGGCTGCCGGTCAGGCTGGTATGGCTCAG
AGACCGGCCGGCCAGATACCTCAGGGCCAGATGCCTGCTCAACAGGGACAGGTTCCTCCT
GGCCAAGCTGGAAACCAGGCCCAGATGATGCGTCCCAACATGCGAATGCGACCCGGAGGT
CCCCAGGCAGCTGCCCCCAACGAGCATCTGAATGCTCTAATTCGCCAGTTGCAGAACCAA
AACCCTGCTTTGTCTCTGGAGGCCGCCACCAAGCTGGCGCATGTGCAGGTGCAGCGGTTT
GTCCAGAAGCAGCAGCGAGTAGCTCGTCAGGCTCAGGGACAGACTCCTCCTCAGGGACAG
ATGCGTCCTGGACAGCCCCAGGGACAACCCTCTCCTCAGATGCGTTCGGGTTCTTCGACT
CCCATGAACATGCAATCGCCACAACTGATGAACGTACAGCTCCAACAGCAACAGCAGCAA
CGGTCTGCTTCACCAGGTCAGAGCCCCGCCCAGCAGCACGCCATGCTTATGCGAATGAAC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAACCAGGGACAGACCCAGGGACAAAAC
CAAGGACAAGGTCCATCCGAGTAAGATGGCCGTCCGATTATTTATGTATACAGATAATAT
TATTGAACTCTACAGTACTTGTAGCTACTGTACTTTTAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D27258g_CDS-001

Protein length: 968 aa.
Product: Conserved hypothetical protein

>YALI0D27258g_CDS-001 MMDPRQETCGDIVSTRKRRLEELYYVSLHPRYPQGLDAKQKLKQFQDQFDLTQNRLFDEN
KLPKAVEEPKPVPTLQTSTPDAGSSPELKRRRTSSIAQLSPTFSRTSLKTNEQQLQEMLL
FLVPSNIPEPTTETKSLAELYYTTQTLPLSKLIPSAHKTLTTDSYHLALLEGKLAVAHAR
IEELKRAGKWGPRQPKRFQDPIRRKTHWDHVLDEMEWMSTDFREERKFKQAMACEIAFSV
LEYHKYGKEACCVKTKPIKFLPEEINESEDTESKMDIDTSMPPPSINPVEVTNISAADSV
TVVDYDTLLSQPRTLSSTEESEDKPEEPSTDSEEVVGGEVPKRPAAPKLPESSPFKLYAS
VDKLDPLSKALFDNLPVTTPPGSAVNALQVPYSDPLDNSKLAPVTHLLAAPPEQDDWWSV
CLEDSPADEDPLPLRSNTRSTLFNSETMRRHVVIKAPQPPQTKYLDFRTPTMWLLADDSQ
LLRLVKEYSYNWDIVSAHMLPQKTYGFTANIERRTSWQCFERWFQLNPTFSLTDLRGPYA
QAAQQWMAAAAKAQAQSKRRISPLGVSNESIQRGHRKLRWASMFDGIRKSMRKRETTPRP
NPQPPRKSQLSESNKKDIASPLDLCKMKFEQDKNLAKAYAQQRMMPGQMPGQMPPVPSNI
PANRQFPGQRPPPPQTAAQIQAHTQAQARAAAAASGHMQQRMAGVGMNRMPGQMNDQHQM
MQFDRQRQLMEQQKMLQQQQQQQFMRTQGQVPPQPGQVQGQVNQNVQGAQVAAGQAGMAQ
RPAGQIPQGQMPAQQGQVPPGQAGNQAQMMRPNMRMRPGGPQAAAPNEHLNALIRQLQNQ
NPALSLEAATKLAHVQVQRFVQKQQRVARQAQGQTPPQGQMRPGQPQGQPSPQMRSGSST
PMNMQSPQLMNVQLQQQQQQRSASPGQSPAQQHAMLMRMNQQQQQQQQQQQNQGQTQGQN
QGQGPSE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG