YALI0D26686g

Overview

Description weakly similar to uniprot|Q0UBQ3 Phaeosphaeria nodorum hypothetical protein SNOG_10811
Locus type CDS
Locus tag YALI0D26686g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 3549260..3550604
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1345 (nuc.)
Previous locus YALI0D26664g Next locus YALI0D26730g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D26686g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D26686gYALI0D26686g_mRNA-001YALI0D26686g_CDS-001

Nucleotide sequence

 

>YALI0D26686g
CCCCCGCAAACTCAAGAGATGTAGCAGATCACTTCTCTTTGGAACAGAAAGGATATATGG
CTTGCTTAGGGGCCCATGCTGCTGCTTTGAATCTCTCTAGGTCTAAAAGTCCAGACTGCG
GGTGTCTACTCCACCTTTGCAACTTCTTATTTCAACCAAATGTCTTTACTTTCTGCCCTC
AGTGTAGTCAGGGCTGTCATGTATATTGCCACACGGCCCATCTTGGCTAAGTTTGCAGAC
GTCCTGGGTCGTTTTGAAACACTTCTTCTCTCTGTGATAATCTTCACCATTGGCTTTATC
ATGCTAGCAGCTTCACCCAGCATTGGCACCTACTTTGGAGCCCACATTTCTACGTGTTTG
GCCAGGTAGGTATCCAGTTTATGGAACAGGTCTTTGCAGCAGACACTTATAATCTCAAAA
ACCGAGCATACTTTGTGGTGCTACCCAATATCTGTTATCTTTTTGTCCCTGGTCGCAGCT
CCCATCACCAGCGCTATCAACCTGGAGCTGGGGCTATGTGGTGAATCATCATTCCTGTGT
CGTCGATCCAGGTTCTAACAATCATGTTCAGACACAAGATAAGAGCTCGGGCTCTAGGTT
TGGAGTGTGGTAAAGCAGTGCTAAACTTCCGAGTCACCATAGCTCAGTTCGATATTGCAG
GCCTCATTCTCTTCACTGGGGTCTCAGTCTACTCTTACTTCCTGAGATCCTCGTCAAGAC
CTCAAAATCTAGGGGCCAGCCACATGTACTGCCTATGATCATATAAGGGCCTATTCTCCT
GGTTCCCGTTCCGATCTGGGAAAAGATGTACCACTCCAGGGGGCTTTTCTCTCTTTCTCT
TCTCTTAAAGACCGTACCCTCATCACTGGGTGTGCAGTGGTAGCGCTCTATTCACTGGCC
TACTACATTTACTCTCCATATTACTACGCCTTGGCTGCTGGTCTGCAAGGGTCTGTCTGT
CACAGCAGCTACAAACGTCACTTCTGTGTGGGTTGTGGGATACACGGCCGGATCGCTCAT
TGTTGCCCTGATCATCAAGTATGTACTGTACTCCAACAGATTCAAACCCATCATTGTAGT
CGGTGGACGCCTCTACATGCTGGGTCTAGGTCTCACCTACCGGTACAAACAGCCCTACCA
CTCGCTTGCGCAGTTCATTGTAGCACAGGTAATCAAGGGTTTGGGGACGCTTCAGTTTCC
CGTTTTGGTCATGATTCAGTCAGTGTTGTTTCATAGGCAGGTCTGCCACTGTCATTTTCG
ATTCTTCGATTTCGGTTGGAACAGCTGTTGGAGACGCTATTTCGGGATCACTTTACCAAC
AGCAGTATCCCAAGAAGCAGGCTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D26686g_CDS-001

Protein length: 448 aa.
Product: Conserved hypothetical protein

>YALI0D26686g_CDS-001 PPQTQEM*QITSLWNRKDIWLA*GPMLLL*ISLGLKVQTAGVYSTFATSYFNQMSLLSAL
SVVRAVMYIATRPILAKFADVLGRFETLLLSVIIFTIGFIMLAASPSIGTYFGAHISTCL
AR*VSSLWNRSLQQTLIISKTEHTLWCYPISVIFCPWSQLPSPALSTWSWGYVVNHHSCV
VDPGSNNHVQTQDKSSGSRFGVW*SSAKLPSHHSSVRYCRPHSLHWGLSLLLLPEILVKT
SKSRGQPHVLPMII*GPILLVPVPIWEKMYHSRGLFSLSLLLKTVPSSLGVQW*RSIHWP
TTFTLHITTPWLLVCKGLSVTAATNVTSVWVVGYTAGSLIVALIIKYVLYSNRFKPIIVV
GGRLYMLGLGLTYRYKQPYHSLAQFIVAQVIKGLGTLQFPVLVMIQSVLFHRQVCHCHFR
FFDFGWNSCWRRYFGITLPTAVSQEAG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG