YALI0D26315g - SIN3

Overview

Description uniprot|F2Z640 Yarrowia lipolytica YALI0D26315g SIN3 Transcription regulatory protein
Locus type CDS
Gene name SIN3
Locus tag YALI0D26315g

Location

Species Yarrowia lipolytica Positions 3499000..3504356
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 5357 (nuc.)
Previous locus YALI0D26301g Next locus YALI0D26323g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D26315g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D26315gYALI0D26315g_mRNA-001YALI0D26315g_CDS-001

Nucleotide sequence

 

>YALI0D26315g
GGACGACAAAAACGTGAGTGTCTAGCGGCTTCAAAAGCGGCCGAATGAGGCAGAGACAAG
ACGCGGCAGGCATATGACGTTGCATCGATCGATCCGCCAAACTACCGACTAACCCAGGAC
CCCCGCAACACATTTATTATTACTCCCACACGTCCATTGGCGTAATTACTGTGAGTATTA
CAAAAGGAGTATGAAGAGGGGTGTCGGAGACATGGAGCGACGGCGACGACGGCAAGGCTG
CCACAAAGGGTGGGCCTGGACGATGACCCTGAAACTGGTTTTGACGATGATATTCCTGAC
GTGTTGTTCAGCTGTTACTTCAAACTAGCCGAAGTGCGGCGCCCGATCAACAACGTCTTA
TCTACGAATCGGGGCTAGAACGATACTGCTGTTGTTATGGTAACAACTACAACTCGACTG
AGCACATATTCTTACACGTTTGTCTGTGTTGCTTCCGTGCCTGTGTTTGTGTGTCTGTGG
TGCCGTTTCGCCCACATGCAGCAGTATTGATTCGACGTCACCAGGGTGTATCAAGTCACA
TGCATCAAGCTGTGGTGTAGCAGAGGACATGGAACCCCGACGTCGTGCGATTTCATTGTG
ACATGGCCATTTATCATCATCCCCGGCCTTACTGTGTCAGTTGCCCGTTTGCCTCGTACA
CCTGTCTGACCGTGCTTTGTGCCATAAATCACACTTCGACGTTGCCTCTATGCAGCTGGT
CCCAACCCAAAATCATGCACCTCATACTAACTCAGACAATGGACCAACCACAGGAGAAAC
CAGCATCCAACGCTACGTCTCCCAAAATGTCGCCAAAGACTGAGCCCGAGGCGGAATCCG
GAGCGGCTCCTGCTATCACTACTGCTCCTGCATCCACCCCGGCTGCTGCCGTCCCCGCTC
CTGACGCCGCGTCTGTCGCAACACCCTCAGCAACACCAGTCGCAACATCATCAGCAAAAG
AAGCATCCACCCAGGCAGCACCCACCACCACCGCTGCTCCTGCTTCTGATGCCCCGGTTG
CCACCGCTCCCCTCGCAACCAGTGTTCCGCCTACTGTGAAACCGGAGGAGAGTGTTCCTG
CTCCTGGCCCCGCCGGCAGTGCTTCTACCACCACGGCGTCCACGTCAGCAGTGCCAACAC
CCGTACCTGCCACAGCACCAGCACCTGCTGTTCCCGCTGTCGCAGCACCCCCTTCCACTG
GCTCTGCTCCACCTTCTACTGCGGGCCCCAGTTCGGCTTCCCCGGCTCCTCCCCATCCTG
CTCCTCCGGCCTCTGCGCCCGCTCCTGCACATTACCACGGCTCTCCCCCTCATCAGATGC
ACCCCGGCCCTGTCCCTGGACCCCGAGGCTCGCCTGCTCCTCCTCAGCAGTCCCAGCAGC
ACACTCCTCAGCCTGGGGCACAACCCTCGCCCGCTGGAGACATTGAACACATGCACCATA
TGCACTTGCCACCGCGAAACCACTCGCAGACCAGCGTGTACCGTGCACTCAATGTGACTG
ATGCGCTCACATATCTGGACCAGGTGAAAATCCAGTTCAGCGATAACCCGGACGTGTACA
ACCGGTTCCTGGACATTATGAAGGACTTCAAGAGCCACACGCTCGACACCCCAGGCGTCA
TTTCGCGTGTCTCCAACCTTTTCCGAGGCTTCCCACATCTCATTGAGGGCTTCAACACGT
TCCTTCCTCCCGGATACCGCATTGAGTGCAGTGGCGATCCCTCCGACCCCCATCCTATCA
AAGTAACCACCCCCGCGGGTACTACTACTGGTGCCGAGATGGGTATTACCCAAGGTCAGC
AGCCTCAGCCTCATTTGCAGCAACAGACTCAGCAACAGCAGCAGCAGCAGCAGCAAGGAG
GTCCCCAGCAGCAACAGGGAGGTCCCCAGGGTGGTCCTCAGCAAGGAGGCCCTCAGGGAG
GCCCCCAAGGCCCCCCTCACATGCAGCACCCTCACATGCAGCAGCACCCCCACCACCCCC
CTCCACATGGAGCTCCTCTCTACGGTCCTCCCTCCGAGCAGGCCGCTGGACAGTCTCTTC
AGCAACTCTCTGGAGTAGATAACCGAGCCTCCCCCAGCGAGCCCAGCCGCCGATCTGGAG
CACCCGTCGAGTTCAACCACGCCATCAACTACGTGCACAAGATCAAGAACCGGTTTGCTG
ACCAAGAAGAGACTTACAAGCACTTTCTGGAGATCCTGCAGACCTACCAAAAGGAGCAGA
AACCCATTGGTGAAGTGTACCAACAGGTGACAATCCTGTTCCGCAACGAGCCCGACCTGC
TGGACGACTTCAAGCAGTTTCTGCCTGACACTAGCGGTGAGGCTGCTGCTTATCTGGAGG
CTGTGGGTCAACAGCAGCGTCTTCCTCCCGTTGGAAACTTTGCTCCTGCCTATCCTGGTC
CTGTTCATCAGCCTAGTGGAACCCCGGGGGCTGCAACTGCTCCTCCCCCTTCTACTGCTG
CTCCCTCGGTCAAGAGAAAGCGATCTTCTGTCAGCGAATTTCCTACCGAATATAGCAATA
TTCGAGGCGGGGCTGCTGCTGCTGCTGGAGCTGCGAACAAGCGGAAGAAGGAGGACTCTC
CTTCCCTTCTGCCCACGCCCTCTCCATTGGCTCCCACTTCTGGCAACGATGCTCTCGTGG
AGGAGATCTCCTTCTTCGACCGAGCCAAGAAACACATTTCCAACAAGGCTGTGTACAACG
AGTTCCTAAAAATTCTTAACCTCTTCTCCCAGGGTCTCATTGACAAGGCTACTCTTGTGG
AGCGAGTGGAGGGCTTTCTGGGTGGTTCTCACGAGCTGTTTGCCTGGTTCAAGAAGTTCG
TCAACTATCAAGAGAAGCCGCTGCATATCGAGAACATTGTGTTCAAAAAGTCGCATCTTG
AGCTATCGTTGTGTCCTCCTCTGGGCCCCTCCTACCGGCTGCTTCCCAAGTCGGAGCGGT
TCATGCCCTGTTCCGGACGTGATGAAATGTGCTGGGAGGTGCTGAACGACGAGTGGGTCG
GCCACCCTACCTGGGCGTCCGAGGACTCTGGTTTTGTCGCCCACCGAAAGAACCAGTACG
AGGAGGTTCTTCATCGAGTCGAGGAGGAGCGTCATGAGTACGACTACTACATTGAGGCGA
ACCTGCGGTCGATTCAGACGCTTGAGACCATCAGCAACCGAATCGCCAACATGAGCCATG
AGGAGCGGCTCAACTTCCGACTGCAGCCTGGTCTGGGACATGGCACCACCATCTACCAGA
AGGTGATTCGCAAGATATATGACAAGGAGCGAGGCCTGGAAGTGATCGAGGCGCTTCATG
AGAACCCTGGTATTGCTGTTCCTGTTGTTCTGCGACGTCTGAAGCAGAAGGACGAGGAAT
GGCGACGAGCACACCGAGAGTGGAACAAGGTGTGGCGGGAAACCGAGCAGAAGGCCTTCT
ACAAGTCTCTGGACCATCTGGGACTCACCTTCAAGCAGCTTGACAAGAAGATGTTGACCA
GCAAGCAGCTTGTTGCCGAGTTGGCTGCTGCTCGAGTCGACAGCAATGCCACTCCTGCCG
CCAAGAAGCCTCTCCTCGGTCTCAAGCCTGTTCAGCAGCTGGACTACGATTTCAAGGACT
ATTCTGTGTTTGGAGATGTTCTCAAGCTGGTCAGTGTGTTTCTGGAGCATAGCAGCAGTT
ATAGCGCTAATGATCGGGAGAAGCTGGGTGTTGTTATGGACGGTTTCCTCTGGTTGTTCT
TTGGTTACGAGAGCGAGTCTGCCAAGGTCGAGGAGTTTAAGGAGGAGACTGAGGACAAGA
TTGACGAGGACGACAAGGAGGCTGAGGCTCGAGACAAGAAGGAGGATGACAAGAAGGAAG
AGTCTCCTATCAAGGTCGAAGAGGAGAAGGAGATGAAGGATGAGTCCAAGGAGTCTACGG
ATGCTAAGGATGAGTCCAAGGTGTCCAATGATGCCAAGGATGAGTCCAAGGAGTCTAAGG
ATGCCAAGGATGATGTCCCTACCACTAACGGACACTCCAATGGAACGGCTAAGATTCGCC
CATCTCTCCGTGAAATCCTGCTAAAGGCCAAGTCTCGAGACAACAGTCCTGACGCTGAGG
ATCCTTCTCACCCCTGGATCCACACCGAAACCCCTCTCAACACTTCCACGCCCGGCAAGC
GACACCGGTTCAACCTTTTTGCCAACACCACCATCTACGTTTTCTTCCGTCTGCTGCAAA
CTCTGTACCAGCGACTTGTGGAGGTCAAGGCTCTGGAGGAGACTGTGTCAGCAGAGATTG
CTTCTCGAACCCCCGTTGACTTTGCCGTCGATCTTAACCTCTACGACCACAAGCTGGACG
ACATGGGTCTGCGATTCAAGTCGAAGAACTGCTATCCTCAGCTGCTCAATCTGTCGTGTC
GACTGATTGAAGGAGATGTGGAGCACCAGTGGTTTGAGGAGGCTCTGAGACAGGCATACC
GAAACCGTGCCTACAAGCTATACACCATTGACAAGGTTGTGCAGGCTCTGGTCAAGCACA
TGCATACTGTCATCAGTGACCAAAAGTCCAATGACATTATGCTACTTTTTGAGCGAGACC
GTCTAACCCCCACGTCGTCTGTTCATCAACAGATTCTGCATCGTCTCCAGGTCAAGCAGG
TGGTTGACTCGGACGAGAGTCTTTACAGAATCGAGTTTGACGAGAAGACCGGACATGTGA
GCATTGTCTATTTGTCTGGTGAGGACGAGTCTGTCAGTGTGGTTGGAGCTTCTGACGAGG
ACAAGTGGAAGTATTATCTGACTTCCTATGTCATGGCAAACCCCACCGAGGGAGTCAAGT
CGGACAAGATCCGAATGCCTCTGTTGAGAAGAACTCTGGAAGACTTTGAGTCGCGTGACG
AGGAGGAAGACGGGCATGTGCATTCCGATTCGATCTTTGAGACGGTGGAGCAGAATCTGC
TTGTTCGAATTGCTCTGGGATCATTCAAAATGTTTTTTGTCCCTGGAACCGAAGACTGTT
TTGTCCGAAAGAGTGTCAAGACTGAGCCTGTCAAGGGCGAGACTGTCCGGCAGCAAAAGT
TTAAGGCCATCCAGGATGGATCTTCTACCTTCAAGCAGGGTCTGGACCAGTCTCAGATTG
ACACTCTGGCGTCGCACTTCGAGGCATTCAAGAATGGCGAGGTGGATGAGTTGCTGGTGG
ATATCAAGACTAACAGCACCAGTGATACCGAAGACCCTAACAAGACCACCGAGATGGTCG
ATGGAGACAAGACTGAGGAGGTCAAGGAGGAAGATGAGGGAGAAAAGGTGGAGACTGAAA
AGGAGGAGGTGGAAATGAAGGAGTGAAGGATTTTTGTATGATTAATGTATTTTATTGTAA
AGCTAAGTCGAATGTTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D26315g_CDS-001

Protein length: 1516 aa.
Product: Transcription regulatory protein
Gene: SIN3

>YALI0D26315g_CDS-001 MDQPQEKPASNATSPKMSPKTEPEAESGAAPAITTAPASTPAAAVPAPDAASVATPSATP
VATSSAKEASTQAAPTTTAAPASDAPVATAPLATSVPPTVKPEESVPAPGPAGSASTTTA
STSAVPTPVPATAPAPAVPAVAAPPSTGSAPPSTAGPSSASPAPPHPAPPASAPAPAHYH
GSPPHQMHPGPVPGPRGSPAPPQQSQQHTPQPGAQPSPAGDIEHMHHMHLPPRNHSQTSV
YRALNVTDALTYLDQVKIQFSDNPDVYNRFLDIMKDFKSHTLDTPGVISRVSNLFRGFPH
LIEGFNTFLPPGYRIECSGDPSDPHPIKVTTPAGTTTGAEMGITQGQQPQPHLQQQTQQQ
QQQQQQGGPQQQQGGPQGGPQQGGPQGGPQGPPHMQHPHMQQHPHHPPPHGAPLYGPPSE
QAAGQSLQQLSGVDNRASPSEPSRRSGAPVEFNHAINYVHKIKNRFADQEETYKHFLEIL
QTYQKEQKPIGEVYQQVTILFRNEPDLLDDFKQFLPDTSGEAAAYLEAVGQQQRLPPVGN
FAPAYPGPVHQPSGTPGAATAPPPSTAAPSVKRKRSSVSEFPTEYSNIRGGAAAAAGAAN
KRKKEDSPSLLPTPSPLAPTSGNDALVEEISFFDRAKKHISNKAVYNEFLKILNLFSQGL
IDKATLVERVEGFLGGSHELFAWFKKFVNYQEKPLHIENIVFKKSHLELSLCPPLGPSYR
LLPKSERFMPCSGRDEMCWEVLNDEWVGHPTWASEDSGFVAHRKNQYEEVLHRVEEERHE
YDYYIEANLRSIQTLETISNRIANMSHEERLNFRLQPGLGHGTTIYQKVIRKIYDKERGL
EVIEALHENPGIAVPVVLRRLKQKDEEWRRAHREWNKVWRETEQKAFYKSLDHLGLTFKQ
LDKKMLTSKQLVAELAAARVDSNATPAAKKPLLGLKPVQQLDYDFKDYSVFGDVLKLVSV
FLEHSSSYSANDREKLGVVMDGFLWLFFGYESESAKVEEFKEETEDKIDEDDKEAEARDK
KEDDKKEESPIKVEEEKEMKDESKESTDAKDESKVSNDAKDESKESKDAKDDVPTTNGHS
NGTAKIRPSLREILLKAKSRDNSPDAEDPSHPWIHTETPLNTSTPGKRHRFNLFANTTIY
VFFRLLQTLYQRLVEVKALEETVSAEIASRTPVDFAVDLNLYDHKLDDMGLRFKSKNCYP
QLLNLSCRLIEGDVEHQWFEEALRQAYRNRAYKLYTIDKVVQALVKHMHTVISDQKSNDI
MLLFERDRLTPTSSVHQQILHRLQVKQVVDSDESLYRIEFDEKTGHVSIVYLSGEDESVS
VVGASDEDKWKYYLTSYVMANPTEGVKSDKIRMPLLRRTLEDFESRDEEEDGHVHSDSIF
ETVEQNLLVRIALGSFKMFFVPGTEDCFVRKSVKTEPVKGETVRQQKFKAIQDGSSTFKQ
GLDQSQIDTLASHFEAFKNGEVDELLVDIKTNSTSDTEDPNKTTEMVDGDKTEEVKEEDE
GEKVETEKEEVEMKE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG