YALI0D25938g

Overview

Description similar to uniprot|P08004 Saccharomyces cerevisiae YNL192w CHS1 chitin synthase I
Locus type CDS
Locus tag YALI0D25938g

Location

Species Yarrowia lipolytica Positions 3447035..3450575
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 3541 (nuc.)
Previous locus YALI0D25916g Next locus YALI0D25960g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25938g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25938gYALI0D25938g_mRNA-001YALI0D25938g_CDS-001

Nucleotide sequence

 

>YALI0D25938g
ATGAGTCGCAATCCGTATGACGGTGAGTATGAGATATGGGATATTCGGGGCGCAGATCCG
ACTGGAAAGACGTGTTGTGCCAACATGGCTGGTCCAACATGGCTGGTGATCTTGACTGGC
AGACTAGACTGCGATGGCACCACGACACACAGATATGGCCATAGGAGCCTGTGCACTGAT
ATTACACAACCACTGGGTCGAACAGATCAGTTCTGTCTCACTGGTACATAACTGTTGTTG
TCGTTACTACCGCCTTCCCAGCTAACTCAGAAATGACGGAACGCTACTACGCAAACGACA
ACCGGTCCCACGATCATCTCACAGATCGGTTCGCTACTCCACACCCTGCTCCTACCCCCC
ACGGTGGCCACCCTACCGAAGAGCTCGCAGATCACTACGGCTTCAGTGCACCCGGTAACA
ACAACTATGCTCCCGCCACTCCAGCCCCCCCGTTGCCGCCGAACCCATATCACAACGGTG
TTCACTCTTCTGCACCAACTGCCCCGTTGGACTTCCCCGAGCAGCCTGGAGCTGACGACC
ATCATGATCTCGGCCACTCCGCTCATCAAAATGACCCCTTAACCCAAGACACATCATACT
ATGGAGCCGGTACAGGCGTGCCACCAGCTGATCCCTACGGCCCCGATCCGTATGCGCCTG
CTCCCGACGCACACTTTTACGAAAACAATGCCATTCCTGCTGTTGGAGGAGCAAACCTGT
ACCAACAAAACTCTTACCAGCATGATCCTGCCCCGTTTGTGCCCGAGGAGGGAGACTCGT
ACCTGCTCAAGCCTTACGGCCAGCAACAGCACCACTCACTGGGCGTTTTTGACAACGGCA
GCTACGTCAACGACGAGGCAGACCTCGACAACTTTGTCCCCTTCCCTATTGCCGGAGATA
CGTATGCCCTCAACACCTACGAGGACAGTGAGGAAGAGGAGCCTCCCGTGCAGATGCCCG
ACTCGTTTGCTGGCTCGCGCAGGTCGTTTGAGTCTGGTGACGATGACGACGACGACGATG
ATGATGATGACGACGAAACCATCGAGGAGCCCAGTGCGTTTGGAGCTCATGTGCCTCCTC
CAGACGTCCAGCCTCGCCGACGAAAAACCATCAAGCGAGTGCGACTCTTCCGAGGCAATC
TGGTGCTCGATTGTCCCGTGTCCAAAAAGCTGCTTTCCAAGTACCCCGAGCCTCGACGGG
AACGAGAGTTCACGCACATGCGGTACTCTGCCGCCACTTGCGACCCGTCGGAGTTTGTGC
CCAACCAGTTCACGCTGCGGCAAAAGTGCTACCAGCAGCCCCGACAGACGGAGCTGTTCA
TTGTGGTTACCATGTACAATGAGGATGATATCCTGCTGGGCCGGACCCTGCAGGGTGTAT
TTAAGAACATCAAGCACCTGACGACGAGGACGCGGTCCAAGGTGTGGGGTAAGGACGCAT
GGAAGAAGGTCGTTGTCTGTGTCGTTTCTGACGGTCGAGAAAAGATCAACCCCCGAGCGC
GGGCCTTGATGGCGGCTCTGGGAGTCTACCAGGACGGATTCGCCAAGAATATCGTTAACG
ACCAACCCGTGGCGGCGCATATTTACGAGTACACGACCATGGTGGGCATTTCCAGCGTCG
ACAAGAGTGTCAAGCTGACGACAGAAAAGACAATCCCCATTCAGATGGTCTTCTGTCTCA
AGGAAAAAAACCAGAAGAAGATCAACTCGCACCGGTGGTTTTTCCAAGCGTTTGGGCCCG
TTCTAAACCCTAACGTGTGTATTCTGCTGGATGCAGGAACCCAGCCCGGTCACGACTCCA
TTTACCATCTGTGGAAGGCCTTTGATAGCCATGCTGATGTTGGCGGCGCCTGTGGAGAGA
TCAAGGCGATGCTTGGCAAGGGTGGCAAGCAGCTTCTCAACCCGCTGGTAGCTGCCCAGA
ACTTTGAGTATAAGATGAGTAACATTCTCGACAAGCCGCTTGAATCCGTGTTTGGATTTA
TTTCCGTGCTTCCAGGAGCCTTTTCTGCTTACAGATACACGGCTCTTCAGAACGACGTCA
ACGGTGTTGGTCCTCTAGCCTCCTATTTTAAGGGAGAGACTCTGCATGACTCTGGAGCAG
GTATTTTCACAGCAAACATGTACCTGGCCGAGGATCGAATTCTGTGTTTCGAACTTGTGG
CCAAGAAGAACTGCTCGTGGAAACTGAAGTACGTGAAATCTTCTTCGGCTGAGACTGATG
TGCCCGACCATCTGTCCGAGCTGGTTATGCAACGACGACGATGGCTAAACGGATCCTTCT
TTGCAGCTATCTACTCATCTGCTCACTTTTACCAGATTTGGCGGTCATCCCACTCGATTG
GCCGAAAGCTATTCTTCCATCTGGAGTTCATCTACCAGACGTTCCAGATGCTGTTCTCGT
GGTTCGCGATTGGCAACTTCTTTCTGGTGTTCCGAATTCTCACTTCGGCTCTTGGAGACC
CCAGCATGCATTTTGCTCCTGGAAACGTGCTTGGAGTCGTCTTTCTGTGGCTCTACTGTT
GCTGCATTGTGGCCACTTTTGTTCTCGCATTCGGAAACCGGCCCACGGGTACGCAGGCCT
TCTACACCGTGGTTGTTTGTTTCTTTGCGGTGTTGATGGCGTATCTAATTTTTGCTGCCA
TTTACATTTCCGTCAAGGCTGTTTCCTATGCGTTATGTTCGAATGGAGGTAAGCTGACTC
TCTCGTTGGTGTTTACCAACGCCACGTTCCGAGACCTGGTTGTGTCTCTGTGTTCAACCT
ACGCTCTCTACTTTCTCATGTCTTTCCTTTACTTTGAGCCCTGGCACATGTTCACCTCCT
TCCTGCAATACCTGCTCATTTCGCCCAGTTACATCAACGTGCTCAACGTTTATGCCTTCT
GCAACATCCACGATATTTCCTGGGGAACCAAGGGAGACACTGCGCAGAAGATGGATCTTG
GTGTGGCCAAAACAAACCAGGCTGGTAAGCTGGAGGTTGACATTCCCACCCAAGAGCTGG
ACATTGATTCCAGTTACATGAACGAAATCAACACGCTGCAGCAGGTGGTCAAGGAGGAGA
AGCGACAACCCAGTAAGGAAGACAAGGAGACGGACTATTATGCACTGGTGCGGTCGTCCG
TCGTGCTTTTCTGGATGCTTACTAACTTTGTGGTCATTGCAGTTGTTCTGAACGCTGGAG
GCCTGAGTATTGTGTCTACTGACCCTGCTCAGGCCGCGGGTGCTGCTGCTCCTGCTGGAG
CTGGAGCTGCTGCTGTTGCTCCTGCCTTGAGATTCGTTCGACGAGGTATTCGGCACGTGC
TTGAGACGCGACAAGATCCAGGCACCTGTGAAGCAGTGGGAGGCCCGACTGATGTGCGAA
CCGAGATTTATCTACGAGTGGTTCTGTGGTCGGTTGCAGCCCTATCTTGTTTCCGAGGCA
TTGGCGCCACTTGGTACCTCATTGCTCGACTGTTTGGACATTAAACTGACGAAAATGACA
CGATATATAAACTGATATACACCTGTACTTGTAATATTATGCTGAATTGAATGAATAATG
A

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25938g_CDS-001

Protein length: 1072 aa.
Product: Chitin synthase I, putative

>YALI0D25938g_CDS-001 MSRNPYDEMTERYYANDNRSHDHLTDRFATPHPAPTPHGGHPTEELADHYGFSAPGNNNY
APATPAPPLPPNPYHNGVHSSAPTAPLDFPEQPGADDHHDLGHSAHQNDPLTQDTSYYGA
GTGVPPADPYGPDPYAPAPDAHFYENNAIPAVGGANLYQQNSYQHDPAPFVPEEGDSYLL
KPYGQQQHHSLGVFDNGSYVNDEADLDNFVPFPIAGDTYALNTYEDSEEEEPPVQMPDSF
AGSRRSFESGDDDDDDDDDDDDETIEEPSAFGAHVPPPDVQPRRRKTIKRVRLFRGNLVL
DCPVSKKLLSKYPEPRREREFTHMRYSAATCDPSEFVPNQFTLRQKCYQQPRQTELFIVV
TMYNEDDILLGRTLQGVFKNIKHLTTRTRSKVWGKDAWKKVVVCVVSDGREKINPRARAL
MAALGVYQDGFAKNIVNDQPVAAHIYEYTTMVGISSVDKSVKLTTEKTIPIQMVFCLKEK
NQKKINSHRWFFQAFGPVLNPNVCILLDAGTQPGHDSIYHLWKAFDSHADVGGACGEIKA
MLGKGGKQLLNPLVAAQNFEYKMSNILDKPLESVFGFISVLPGAFSAYRYTALQNDVNGV
GPLASYFKGETLHDSGAGIFTANMYLAEDRILCFELVAKKNCSWKLKYVKSSSAETDVPD
HLSELVMQRRRWLNGSFFAAIYSSAHFYQIWRSSHSIGRKLFFHLEFIYQTFQMLFSWFA
IGNFFLVFRILTSALGDPSMHFAPGNVLGVVFLWLYCCCIVATFVLAFGNRPTGTQAFYT
VVVCFFAVLMAYLIFAAIYISVKAVSYALCSNGGKLTLSLVFTNATFRDLVVSLCSTYAL
YFLMSFLYFEPWHMFTSFLQYLLISPSYINVLNVYAFCNIHDISWGTKGDTAQKMDLGVA
KTNQAGKLEVDIPTQELDIDSSYMNEINTLQQVVKEEKRQPSKEDKETDYYALVRSSVVL
FWMLTNFVVIAVVLNAGGLSIVSTDPAQAAGAAAPAGAGAAAVAPALRFVRRGIRHVLET
RQDPGTCEAVGGPTDVRTEIYLRVVLWSVAALSCFRGIGATWYLIARLFGH*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG