YALI0D25850g

Overview

Description weakly similar to uniprot|Q9P7W4 Schizosaccharomyces pombe F-box/WD-repeat protein pof10 (Skp1-binding protein 2)
Locus type CDS
Locus tag YALI0D25850g

Location

Species Yarrowia lipolytica Positions 3437308..3439522
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2215 (nuc.)
Previous locus YALI0D25828g Next locus YALI0D25872g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25850g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25850gYALI0D25850g_mRNA-001YALI0D25850g_CDS-001

Nucleotide sequence

 

>YALI0D25850g
ATGTCGGGAACAGTATTAGGCAAGAAGGCGCCCGTTCTGGGGCTTCCGCAGGAGGTGTTT
GCCGAGATCTGCTCGTCGCTAGACGTGGCGTCGCTCGAAAACCTCGTACTAGTGTGCCAG
CAGTGGACCGAGTGGATGAAGGACGACTTTGTGTGGCGAACGTGTTTCCAGCGGGTCTTT
GGGGTGTCTGAGGGCGAATTTGGCTGGATGGGCGGCGAACCCACGTCATGGAGACGCGAA
TACTGCAACCGAATGCTCACTCTGTACCGATGGAGCCGAAAACGGGCAGCCGCCAACAGA
ACAGCAGTATGCTACCGACCAAGAGAAACAGTCACCAACATGCGATGTTTCTGGGACCAC
GGCATCGGAATGATCGCATATCCACATTCTGGCCTTCTTACAGTGTTTGATCTCTCCACT
CTGAAGGCACACAAGCCTAGTATCCATATTGGACGCAGCATGGGTCCTATTGTGGGACTC
ATTTGCTCGTCCATGAGTCCCTACGGCTTTCTGCACGCCACCGACGCCAATCTCGACGTG
CTGCTGCTTTCAAACAGTTGCAAAAAACGTGTAACTATGAAATTTGCTACGTCCCAGGTC
CATGAAGCACCCATAGTGCAATGCTGGATGACCCAAACGGCATCTCCCAAGGTCTGCCAG
GGCCCCGACGGCAAGGTGGGTGCTCTGAGTATTGACAACGCCGGCTGGGTGGCAAATTGG
GAGCTTGGAGGAGGTAAGTTGGTCGGTAAAATGCTCCTTCCGGTTTCGGATGTCACTACG
GGCCATACGGGAATCGTTCTGGACCTCTTCAGCGACGGTAAGGATGTTTTTATTGTTGTG
GGTCGGCCAGTCAAACAGATTGTAGAGATTTACAAGTGGGATGGTCAGAGTGCTGATGTT
GCGGAGGAGGTTGAGGTGGAACCCATTTCTGAGGCAGAGAACAAACCAGTCCGACTACCC
CCAAATATCACCCTGATAACGACCATCTCGTCCAAGGTGGACCATCTGCAATACCTGACT
CAGTTTGACGAAAAGTCGGGCATGTACATAATTACCCTGGGAGGAATGAAGGTGTACACG
ATGGATGCAAAGACAGGAAACACGTCGACTTTGACAGTGCCTTCCGAAGGCGAGGACGGC
ATATGTGTTATTGACGTTACCAGCGGATCAGTTATCAAACATGTCGCTGTTGCTACTCAT
CGAGGAGCTATCCATGTCTTCAATCTCAAGTCGTCCGACTTTGTCTACACCATTGATATG
AACCAGTACGGCAATGTGATTGCTGGAAGTGGTACCACCGTCAGCGATTCACAGCAGGTG
TCTATTGGAACTGTTGCTTTGAACGCTGCCGTGCTGGTGACGGTGACAGACTCGTCCATC
ATTTCCGTTTTTGATGTCCTGAGCGGTTCTCATCTGCGAACATTTGTGCCAGAGTCGCAT
CGAGGATTCAAACAGAATCGCGACGCTTTTGGCACGCGATGGGCCCCTCTGTGTACAGAT
CTGTCCATTGATCCGCTGTCTACATCTCATAGAGGCGTCATGGCGTGTGGAGTGTGCATT
GAGTCTTTTGAGCAGATTTTGCCGGACGGAAACTCGCGTCGACAGGCAAAACGAAGCAGC
AAAAAGAAGACCATTGCCAGAGGTCTGTCTCAGGCTGAAATGCTCTCTATCCAGCGAGCT
GAAATCAACGACCAAATCAGCACGGGTGTTGAGAAGATTAAGGAAGACAAGCAGGAGGTG
GAGAAACGAGAAAAAATTGTGCAAAAGTATAACGGAAGCCGAAACGGCAGTATGGGATCA
TTCTCTGGAGGCGAGCGTTTGTCTGAAGAGGAACAGCTGAAGCTGGCACTACTAATGTCT
CAAGACAACAACGTCATCAGAGAGGACGAGGAGGAAGCTCTAGCCAGGGCTCTGGAGGCT
TCGTTATTAGAAGCACAGAATTCATCTGCGGGTAACGAATCATTCTCCGAAGAGCCGTAT
GAGAATGGATTTGAAGGAGAAGAGGAGGATTACCATGATGACTACCAGGGAGACTATGAG
GAGGAGGACGAGGATCTCAAGTATGCTCTGGAGCTGTCCTTAGCTGAAGAGGCCTCCAGG
AACCATCAGTGACAAAGTCATGACCCAAAACACAAAACAGAAGAACTAAGTAAATAGGTA
GATACGGGATATTTATTGCAGAATATACAGGGACTAATTCCCATCGTTACACAGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25850g_CDS-001

Protein length: 704 aa.
Product: Conserved hypothetical protein

>YALI0D25850g_CDS-001 MSGTVLGKKAPVLGLPQEVFAEICSSLDVASLENLVLVCQQWTEWMKDDFVWRTCFQRVF
GVSEGEFGWMGGEPTSWRREYCNRMLTLYRWSRKRAAANRTAVCYRPRETVTNMRCFWDH
GIGMIAYPHSGLLTVFDLSTLKAHKPSIHIGRSMGPIVGLICSSMSPYGFLHATDANLDV
LLLSNSCKKRVTMKFATSQVHEAPIVQCWMTQTASPKVCQGPDGKVGALSIDNAGWVANW
ELGGGKLVGKMLLPVSDVTTGHTGIVLDLFSDGKDVFIVVGRPVKQIVEIYKWDGQSADV
AEEVEVEPISEAENKPVRLPPNITLITTISSKVDHLQYLTQFDEKSGMYIITLGGMKVYT
MDAKTGNTSTLTVPSEGEDGICVIDVTSGSVIKHVAVATHRGAIHVFNLKSSDFVYTIDM
NQYGNVIAGSGTTVSDSQQVSIGTVALNAAVLVTVTDSSIISVFDVLSGSHLRTFVPESH
RGFKQNRDAFGTRWAPLCTDLSIDPLSTSHRGVMACGVCIESFEQILPDGNSRRQAKRSS
KKKTIARGLSQAEMLSIQRAEINDQISTGVEKIKEDKQEVEKREKIVQKYNGSRNGSMGS
FSGGERLSEEEQLKLALLMSQDNNVIREDEEEALARALEASLLEAQNSSAGNESFSEEPY
ENGFEGEEEDYHDDYQGDYEEEDEDLKYALELSLAEEASRNHQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG