YALI0D25080g - TGD1

Overview

Description uniprot|Q96VM0 Yarrowia lipolytica YALI0D25080g TGD1 dTDP-glucose 4,6-dehydratase
Locus type CDS
Gene name TGD1
Locus tag YALI0D25080g

Location

Species Yarrowia lipolytica Positions 3343985..3345485
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1501 (nuc.)
Previous locus YALI0D25058g Next locus YALI0D25091g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25080g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25080gYALI0D25080g_mRNA-001YALI0D25080g_CDS-001

Nucleotide sequence

 

>YALI0D25080g
ATGAGCATCCTAGTGACTGGAGGAGCGGGATTCATGTGAGTATCCCATTGTCTCGCCACT
ATTGAGCCTTCTAACCCAGAGGATCGTGGATATCACGGCATTTTGCCCTGACGGAAAAAG
TCGTCTGCTTGGATGCCCTGAGGTACAGCGGTCGCAAAAAGAACCTAGAGGACGCAGAAC
TGCAAGCGTTTGTACACGTGGACATTTGCGACGCCCAGGAACTCCGTCGGGTCTTCGACA
CCTACGATATTGCCACCGTCATTCACGCCGCAGCCGAGAGTCATGTTGAGTGCTCGTACT
CGGATCCGATTCAGGTGACGACCGCAAACGTGTTGGGCACACAGACGTTACTGGAAGAAA
TGACACGCAACGCGAGAGAAACGGACACAGAAATAAGAGAACAAAACCTCCCAAAATTGA
TCTACATCTCGACAGACGAAATCTACGGAGATCAGGCTGATCTAACTGGCACCGAAGACC
TGGAAACTTCGCCACTATGCCCTTCCAACCCGTACGCAGCGTCCAAGGCAGCTGCCGAAA
TGTTCATTTCCGCCTACACAAAGTCTTACGGTCTGGAGTGCGTCACTCTACGTTTCAACA
ACGTGTACGGAGAATACCAGTATCCGGAAAAAATCATTCCTGCGTTTTGTCTGGCCATGT
TAAAGGGCGACAAGTGCATGCTGCAGGGCTCGGGAGAACACAGAAGGAGATACATTTACG
CAGATGACTGCGTGAACGCTGTGCAACTGACATACAACCATTTCGACGAGCTCAAGGGCC
AGGTGTTCAATGTTGGGAGCAAGGAGGAAAAAAGCAACAGGTGCGTGTTTGAGACGTTGG
GTGGAATGCTGGGGTACGATCAGGGGCCCCAATTTGTGTCTGATCGTCCGTACAACGATT
CCGCATACAGAACGAACGACGACAAGATTCGGGAGTTGGGGTGGGAACAGAAGGTATCAT
TTGAGGACGGTTTGACGAGGACGGTCGACTGGTACCGGAGGAATGTGAGTTGGTGGGATG
GTGAGTGATTCCGACCTTCCGCTACTCTCAGGGTGCTGTACTAGTCACCTTTACACACTG
GCATGGCATTGGTACGTAGGAAACTGGGAAACTGCTGATTGGTAAGCGAATGTCATTCTT
CTTATAGAAGATATTTACTAAGTCACTTCCAGGAACCACAAGCAGCATAATCAGTGATTA
CCAGTGGGCACTAACAATGCGTCCTAGTCTCGAAAGTCGAAAATGATCACGGAGGAGAAA
GATCAAACGGGAAACATGAATTAACATCACATGAATCACTCTACCAATCAGATCATGTCC
CTCAGATCTAGAGCTCCTAAAGTCCTCGGTTAAAACCACCCCAGAAAGGAACCATAGTGT
ACGACGACAGAGCTGAAGCCAGACATGATCAAGTGGAATGAAAACTGTATCGAAAAGTGT
TATAAACCGAATCTATCTACACCTCTTTGTAGCTTGTTATACAACTACAATTTCTTCTGC
T

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25080g_CDS-001

Protein length: 328 aa.
Product: dTDP-glucose 4,6-dehydratase
Gene: TGD1

>YALI0D25080g_CDS-001 MSILVTGGAGFIGSWISRHFALTEKVVCLDALRYSGRKKNLEDAELQAFVHVDICDAQEL
RRVFDTYDIATVIHAAAESHVECSYSDPIQVTTANVLGTQTLLEEMTRNARETDTEIREQ
NLPKLIYISTDEIYGDQADLTGTEDLETSPLCPSNPYAASKAAAEMFISAYTKSYGLECV
TLRFNNVYGEYQYPEKIIPAFCLAMLKGDKCMLQGSGEHRRRYIYADDCVNAVQLTYNHF
DELKGQVFNVGSKEEKSNRCVFETLGGMLGYDQGPQFVSDRPYNDSAYRTNDDKIRELGW
EQKVSFEDGLTRTVDWYRRNVSWWDGE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG