YALI0D25058g

Overview

Description similar to uniprot|Q04636 Saccharomyces cerevisiae YML069w POB3 protein that binds to DNA polymerase I (PolI)
Locus type CDS
Locus tag YALI0D25058g

Location

Species Yarrowia lipolytica Positions 3340885..3342714
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1830 (nuc.)
Previous locus YALI0D25047g Next locus YALI0D25080g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25058g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25058gYALI0D25058g_mRNA-001YALI0D25058g_CDS-001

Nucleotide sequence

 

>YALI0D25058g
ATGTCTACGACTGAATTCGACGGCATCTATCTCAATCAGAGCAAGGCACACGGCCGTCTG
CGGATGGTTGAGACGGGCCTGGGCTGGAAGGCAGTGCAGAAGACGTCAATGGGCGGATCG
AAGGAGACCAAGAAGGACGAGCCGTTTCTACTTGGAAAGGAGGAGCTGCTGGCGGCGTTT
TGGAGTCGGGGCTCTCGGGGATTCGAGATGAAGATCCAGACGAAAAACCGCGGGGCCGCC
AACTTTGACGGGTTTGAACAGGACAACCTGGAGGAGCTGAAGAACGTGATGAAGCGCAAC
TATGGCATTTCAGTGGAGCAGCGCGAGCACAGCGTCAAGGGTTGGAACTGGGGCAAGACG
GACTTTGAGCGATCCGAGCTGGTCTTTTCCGTCGCCAACAAGCCCGCATTCGAGATCCCC
TACGCCGAAGTGGCCAACTCCAACCTGGTGGGCAAAAATGAGGTTGCTCTGGAGTTCCAG
CAGCCCGCCGATGGACGGGCAGGCGACGAGCTCGTCGAAATGCGATTCTACGTGCCCGGA
GTAACTTCTGTGGAAGGTGATGAGAACCCCAAGAAGAAGCAGAAGACGGAGAAGGAGGGA
GAAGAAGGCAAGGAAGGAGACGACGACGCCGACGCCGACGACGAATCAGAAGAGGAGGTC
CAGTCCACCGCCCAGATCTTCTACGACACCCTCAAGGAAAAGGCCGACATTGGAGCCGTG
GCAGGTACGGCTGTGGTGTCTTTGTCGGAGATCTACCTGGTCATCCCCCGAGGACGATAC
GATATCGACATGTACGCCAACTTCATGCGACTTCGAGGAAAAACATACGATTACATGGTG
CAGTACAAGCACGTGCAGCGGCTCATTGTGCTGCCCAAGCCCGACGATCTGCACAACATT
CTCGTGGTGCAGCTGGATCCTCCTCTCAGACAGGGCCAGACTCGGTACCCGTTTCTGGTG
ATGCAATTCCTGCGTGAGGCCGAAATCAAAGTCGAGCTCAATGTCGACGACGCCGAGTTT
GCCGAAAAGTACGCCGACAAGGGTCTCAAGCAGTCGTACGACGAGTCTGCTCACCAGGTG
GTTGGATCTATTTTCCGCGGTCTCACTGGCCGAAAACTGACCGTGCCAGGCTCGTTCAAG
ACCGTGCATGGCCATGCTGGTGTCTCCTGTTCGCTCAAGGCGTCTGAGGGCCATCTATAC
CCCCTGGAACGAAATTTCCTGTTTCTTTCCAAGCCCGTTTTCATTCCCTTTGCCGAGATT
CAAGATATCACTCTGTCTCGAGTGGGTTCTTCGGTAACCACCTCTCGAACGTTTGACATG
ACTCTCAAGCTGCGAAACGCCCAGGGTGAGTACCAGTTCTCCAACATCTCCAAGGAAGAG
CAGGAGGGTCTCGAGGCGTTCATCAAGTCCAAGGGCATTCGTCTTAAGAATGATCTTGCT
GAGGAGAAGGCGCTGCTGGCTGCCACTCTGGCTGAGGTGGACGATGACTCTGATGATGGA
GGAGAGTTTCGAGGCTCGGCTGATGAGGATGACGAGAGTCCTGATGAGGACTTTCATGCC
GAGAGTGATAGTGAGGTGGCGGAGGAGTTTGACTCGAATGCCGAGAGCAGTTCGGGAGAG
GAGGATGACGAGTGATTCCGGCGCGGCTTCGCGCGTCGCGGGAAATTGCTTGTTGGGTAA
CAATAGCAGCTCCGGACGAAGCAAACTCGTATCTGATTCGAGACAGATTCAAGAGTGCAA
AAGTCTCACAAGGAATTTGCTACTGGTAGATATACGAATTAATGTTGATTAGGTGAATGT
ATTTGAATGGGACTCATTCAGTTGGTAAGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25058g_CDS-001

Protein length: 545 aa.
Product: Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), putative

>YALI0D25058g_CDS-001 MSTTEFDGIYLNQSKAHGRLRMVETGLGWKAVQKTSMGGSKETKKDEPFLLGKEELLAAF
WSRGSRGFEMKIQTKNRGAANFDGFEQDNLEELKNVMKRNYGISVEQREHSVKGWNWGKT
DFERSELVFSVANKPAFEIPYAEVANSNLVGKNEVALEFQQPADGRAGDELVEMRFYVPG
VTSVEGDENPKKKQKTEKEGEEGKEGDDDADADDESEEEVQSTAQIFYDTLKEKADIGAV
AGTAVVSLSEIYLVIPRGRYDIDMYANFMRLRGKTYDYMVQYKHVQRLIVLPKPDDLHNI
LVVQLDPPLRQGQTRYPFLVMQFLREAEIKVELNVDDAEFAEKYADKGLKQSYDESAHQV
VGSIFRGLTGRKLTVPGSFKTVHGHAGVSCSLKASEGHLYPLERNFLFLSKPVFIPFAEI
QDITLSRVGSSVTTSRTFDMTLKLRNAQGEYQFSNISKEEQEGLEAFIKSKGIRLKNDLA
EEKALLAATLAEVDDDSDDGGEFRGSADEDDESPDEDFHAESDSEVAEEFDSNAESSSGE
EDDE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG