YALI0D05379g

Overview

Description similar to uniprot|P38928 Saccharomyces cerevisiae YIL140w SRO4 required for axial pattern of budding
Locus type CDS
Locus tag YALI0D05379g

Location

Species Yarrowia lipolytica Positions 695257..698926
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3670 (nuc.)
Previous locus YALI0D05357g Next locus YALI0D05401g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D05379g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D05379gYALI0D05379g_mRNA-001YALI0D05379g_CDS-001

Nucleotide sequence

 

>YALI0D05379g
CTCACCCTCCTTCATCTCCGTCTCCACGTTCGACACTCCTTCACCTTCCGACCCAAGATC
ATTACATCGCTATTCATTAATAGCTAATTATTTATAGTGAGTATCACAGTGCCGGACGAT
ACCGCGACCTGGAAGTTCTGTGGTGTCTTGCTACACGACTACCCGACACACACCACCGAC
ACCATCAGAACCTGGCCAACACCCACACGAACAGCTTCACAGCTTGCGCACACTCGCGAC
TCGCAAGCAGTGACACTTCATCACAACCCCCTTCCTTACTAACCCAGATGCTCGTCAAAT
CCCTTCTGCTGGCCACGGCAGTCGTGGCTGCACCCTCTGCGGGATACCCGTTCAACTCAC
AACTGCCCCCGGTCGCTCGATGGGGCCAAAACTACGCCTACACACTGCCCCGAGACACGT
GTACCGGCGACGGCGAAATCTCGTACTCGGCCGACCAGCTACCCTCGTGGCTGTCGTTCG
ACGGCAACAACTTCAGCGGCACGCCCGAGGGAGGCTCCAGCGACGAAACCATCTTCTTCC
AGCTCAAATGCAAGGACGCGTCGGGGCAGGAAGCCACGTCTGAGTCGAAGCTCATCATCT
CGTCCGCACAGCCCCCCAAGCTCAACCCAGGCAAGACTCTGGTGCAGCAGCTTGCGAAAT
TCGGACCCACCGACGGAGGAAGTGGACTAGTGGTCAAGCCCAACGAACACTGGTCCGTGT
CGTTCGATAAAGACACTTTCGTCAAGACCGACAGAGACATTGAAGGCTACTACGGCATCA
TGCGTAACCACACCCCTTTGCCCATTTGGATGAGCTTCAGCCCCGGAGACACAAACACCT
TTGCCGGTCAGTCACCCGCCATCAACTCACAGATTGCTCCTGCCCAGGCGTTTGCCGTCG
AGTTTGTGGCTTCTGACTACGCCGGCTTCTCTGCTGTTTCCCAGACCTTTTCTCTGGTCG
TTGGTGCTCACCAGCTGACTACCGAGGAGAGTTCTATTTCACTGGATGCCAAGCGTGGCA
ACGAAGTTGACGGTCAACTGCCCCTGGACAAGGTTATTCTCGATGGTTCTCCTATCGGCG
ACCAGCTGGGCTCTATTCAGCTCAAAATTGATGGCTGGCTGAAGGTCGACAACAACGGAA
AGCTCTCTGGTACTCCTGACGACAACGCCACCTCTGGACCTGTTTCTGCCACCGTTTACG
ATAAGTATGGAGACGCTGTTGCTATTGTCATTAACGTGAATGTTGACGGCGCTCCCAAGA
GTGTTACTTCTAACTCCAACTCTGAGTCCAAGACCGATTCTGAGTCCAAGACCGATTCTG
AGTCCAAAACCGATTCTGAGTCCAAGACCGACTCCGAGTCCAAGACTGAGTCCAACGTGT
CCAACTCCGGGTCCAAGACTGAGTCTGGTTCGTCCAAGACCGACTCCGACTCCTCGGCTA
CCACTACCAATTCTGACTCGTCCAAGACTTCTTCTGACGCGTCTGCCACTTCCTCAGGAG
CCACAAAGACTTCTTCTGGTGCTTCCAAGACATCGTCCACTGCCTCCTCAACTTCCTCAT
CCACCTCCTCGTCGGCCCATCCTATCTTTGCCACCCAGATTCCCGACGTGAATGCCACCC
AGGGAGGCTGGTTCTCGTTTACCATCCCACAGGACGCCTTCCGGCTGAGCCGAAAGCGGT
CGGTGCTCGTCAAGCGGGTCGCTACTCTGTCTGCATCCTACAATCCTGCCTCTGCCGGTG
ACTTCATCCACTTCAACCCCTCCAACATGACGTTCTCAGGTGAGATTCCCGACGACTTTG
AAGGAGCCGACGTGACTGTCACCGCCGTGGACGGAGATAAGAGCGATACCATGACCTTCC
ACATCAATGGAACCAAGAAGAGCGACACCACGTCGAGTGCGTCTTCTTCTTCGGCCTCTT
CTACATCCACATCCAGTGGCTCGTCTACAGCCTCTTCCACAGCCTCTTCCACAGCTTCTT
CCACAGAGCCTACTTCCAGCTCTTCCTCTACCTCGTCTGCCACTCCCATCCCCGTTAAGA
CTACCAACAAGTCCAACACCACTGCTGTGGCGGTGGGCTGCGGTGTAGGTATTCCTATCG
GTCTCATTGCACTGGCTCTGCTGGTGTTCTGCTGCTGGCGACGAAAGCGACACAACAACA
AGTCCAACGACGACGATTTTGAAAAGGCAAACATCTCGCATCCCATTCCCTTCGACGATG
GCCACCAGGATCTCGACGATATGTACCTGGGTCCTGAAAAGACCCGCGTGTCGCCTCTGA
CGCCTTCCAAGTCTCCCAACGGAGGTCCTGGAGGTCCCGGAATTGCTGCTCCCATAATGA
TGGACAAGGGTAAGGAGGTGGATGAGGACTGGGACACGCCCAAGCGACTCTCGGCCATGA
ATTTCTTCAAGGTCGACCAGTACGACAGCGACGACGCCTCCATGTACTCCTCTGAGCGAA
CACACGTTGACCGTGAGATCGAAGAGCGACCTGATAATGTTCCCGAAATGCCCAACGTGG
ATTCTGACTACTACACCCAGCCCCATGGTATTGGAGCTCACACCGGAGCCGGTCTCTCTG
AGGGTGCCGCTGCTGCTGGAGCTGCTGCTGCCGCTGGAGTTCAGCAGCCTGCTCAGACTG
TCCAGCCCCGAAAGTCATGGCGACAGACAATTGATTCCACTAGACGGTGGCAGGACCGCC
AGTCCATGGCTTCTCTGGCGACCGTTTCCACTGACGAGCTGTTCTCTGTGCGACTGGTTG
ACGACGATGAGGAGCAACAGCATATGCATGACCAGCACATGCAGCCTCCTCACTCTCCCA
TTGGCCTTGCTGGCCGAAGAAACACTGACAGCGAGTTCATGAACCCCACTCAGTCCATGA
TTCTCACTCCCCGACAGTCCGTGATCGATGACGACTCCCCCAACTACCACCACATTGGCA
CCAACTCCACTGGCCAGCACTCTGGACACTCTGGACACTCTGCACAGCATTCTATTGGCT
CCATCTCCTCCGAGGAAGAGCCCTACATCGCGCAACAGTTTGTGTCCAACTCGCGGCCCA
ACTCTTCGCTCAAGATCAACTCCAACTTGGCGTCGGTGACCGAGGAGTCGCCCAACCTGC
ATAAGCACCTGACTCCCAACATTGAGGCAGCCAACGAGTACACTCCTACTCTGTCTGGCA
CTCCCAACACCTTCACCAACACTCCTCCTCCTCCCATTCCTGCTGTGAGCACCAACAGAC
CTTCTCCTTCGTCACTGAGATCGCAGCTGGAGCCCCCCAACCAGCAGTTTGACTTTGAGG
ACAACGAGGAGTATAACACTCCCGAGGTGGAGTGGAAGGGCGACTCGTCTAACTTGGTCC
CCGGCTGGAACAACCACGACGACGATACCTCGTCAGACGACGACCGGTACCACCGGTACC
ACGACTCTGTGTCGGAGCCCCACTATGAGCATGAGATGAACCCTTCTCCCAAACTCGTCA
ACTTTACAAACTCGGGTCGAGCCTCCAGCAGTGACTCGCCCATGTCCAGCAGTCGAGACA
TGGAGAACTCGCAGTCCGTATCTGCCGAGCTGGCGTTTATCTAAGCATGAGGTGATGTCT
AACAGGAAGGAGGTGAGAGCAGCCCAGTGCGGGTGTGCATAAAATAATGTATTATATGAT
TGATTAACAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D05379g_CDS-001

Protein length: 1099 aa.
Product: Integral plasma membrane protein, putative

>YALI0D05379g_CDS-001 MLVKSLLLATAVVAAPSAGYPFNSQLPPVARWGQNYAYTLPRDTCTGDGEISYSADQLPS
WLSFDGNNFSGTPEGGSSDETIFFQLKCKDASGQEATSESKLIISSAQPPKLNPGKTLVQ
QLAKFGPTDGGSGLVVKPNEHWSVSFDKDTFVKTDRDIEGYYGIMRNHTPLPIWMSFSPG
DTNTFAGQSPAINSQIAPAQAFAVEFVASDYAGFSAVSQTFSLVVGAHQLTTEESSISLD
AKRGNEVDGQLPLDKVILDGSPIGDQLGSIQLKIDGWLKVDNNGKLSGTPDDNATSGPVS
ATVYDKYGDAVAIVINVNVDGAPKSVTSNSNSESKTDSESKTDSESKTDSESKTDSESKT
ESNVSNSGSKTESGSSKTDSDSSATTTNSDSSKTSSDASATSSGATKTSSGASKTSSTAS
STSSSTSSSAHPIFATQIPDVNATQGGWFSFTIPQDAFRLSRKRSVLVKRVATLSASYNP
ASAGDFIHFNPSNMTFSGEIPDDFEGADVTVTAVDGDKSDTMTFHINGTKKSDTTSSASS
SSASSTSTSSGSSTASSTASSTASSTEPTSSSSSTSSATPIPVKTTNKSNTTAVAVGCGV
GIPIGLIALALLVFCCWRRKRHNNKSNDDDFEKANISHPIPFDDGHQDLDDMYLGPEKTR
VSPLTPSKSPNGGPGGPGIAAPIMMDKGKEVDEDWDTPKRLSAMNFFKVDQYDSDDASMY
SSERTHVDREIEERPDNVPEMPNVDSDYYTQPHGIGAHTGAGLSEGAAAAGAAAAAGVQQ
PAQTVQPRKSWRQTIDSTRRWQDRQSMASLATVSTDELFSVRLVDDDEEQQHMHDQHMQP
PHSPIGLAGRRNTDSEFMNPTQSMILTPRQSVIDDDSPNYHHIGTNSTGQHSGHSGHSAQ
HSIGSISSEEEPYIAQQFVSNSRPNSSLKINSNLASVTEESPNLHKHLTPNIEAANEYTP
TLSGTPNTFTNTPPPPIPAVSTNRPSPSSLRSQLEPPNQQFDFEDNEEYNTPEVEWKGDS
SNLVPGWNNHDDDTSSDDDRYHRYHDSVSEPHYEHEMNPSPKLVNFTNSGRASSSDSPMS
SSRDMENSQSVSAELAFI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG