| Description | Ylli, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli |
|---|---|
| Locus type | mobile_element |
| Gene names | Ylli_gag, Ylli_pol |
| Locus tag | YALI0C03498t |
| Species | Yarrowia lipolytica | Positions | 458292..464792 |
|---|---|---|---|
| Strain | CLIB 122 | Strand | Sense |
| Chromosome | YALI0C | Total length | 6501 (nuc.) |
| Previous locus | YALI0C03465g | Next locus | YALI0C03520g |
Here is a representation of the structure of the locus YALI0C03498t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :
By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.
>YALI0C03498t
AATCGAGCGCGACCAGAAAAAACGTTCACCATGGAAACAGCGCAAGCCCAAGCTTCGGCG
GGTAACTCCTTGGGCGCTCCGAACCCCCCACCTCCTGATTTATCGCGAGGTGATGGAGCC
ACCTCAACCGAAACCCCCAACCAAACCGACATTGAAAAAATCCAAAAAAACGACAAAAAC
GATGAAAACAACAAAAAAAACGACAAAAACGACAAAAACGACAAAAAAAACGACAACAAT
ATCACCCTCAACGCCTGGAAGAGCAAGGCCGAAGTCAAGGCTCTCCTGACATCGAACCCC
TCCACACTCAAATTCAACCTCAACAAGGAGCGAATTTCGGAGCCCCTTGCGGCGCCGAAT
GGTAGGCATACCTCCGGCCGTTTCAACGTGTCCTATGTAGCCAGCAAGGAAAACTTCTTC
CGAAGAGCTCTTGACCGCTCCGCCACCCCTGATTGGAATCTTCCTATCTCCATGTTCCTC
GAGCACCTCGATAACGCCGCTGAAGTCGACGAGAAGGACACCATCAGTGTCCTCGAGGGC
GTCATCGAAAAGTTCGACGAGATCAAGGGTCAGGTTGGTCTGGCGGAGTTTGACCTGTCC
AGGCACAACCTAGACATCGTCCCCCACCTGATCGACCAGATTAACTTAGAACAGGACCCT
GAAGACTGCTACCAAGTGGGAAATGGTTGGCACTACCTGACGTCGGACGCCCTCACTGAC
CCCCACGAACAACGAATGGCTGTCATTCTGGAGACAGTTAGTCTCATTGTTGAGGCCAAT
ACTCAAGATTATCGCATCATGAGGAAGGGCTCGGCTAACCCTGCTGGACGAAGAGTACTT
TACTACTTCAACCTACCCTCGTACATGAAGATGGAGCGTCAGACGGAGGATGCTTTCAAG
ATCCACCTCAACGCTATTCTCAACCAGTTCGACGTAGACATTGATCAGGCCATTCCAGGT
TCCTCCCTCTTGAGTGGCACCCTTCTGATGACCTCTGCCAACCATCAGAACATCTCGGGT
CCTGTGATCGCAGTTCGTGCTCTCCTAGGCTCCACCCTGCCCCAGACCATCCCCGACTTC
TTCGTCAACCTGGATCCCACCAAGGCTAGGCTTACCGGCTCAAAGTTGATCAAGATGCAC
TTCGCCAACGGCGATAACATCTGTGTTAAGTGCAAGAGCACTAAGCACATCCGGGAGGCC
TGCCCCGAGAAAGACATGGTCACTCCCAAGATCTTCCGCACCCGCGCTCACCAGGGTACC
CTCCCACAGAGAGGTAAAGCCCTTGCTTCCATCCATGCCCCATCCACCGTGGAGCCCCCG
GTCCAAACTCGCAAGTTCCACCACACGCCTGCTACTCACCAGTGGGAGACCGTCGGCACT
AAGTCCCCTAGACATAGACGGACTCGAGACACGTCCCCCCAACCCACCGGTCAGAAGCCC
CTCCGATCTTACTACAACTTTGAAGTCTTGAGCGACAAAACCGGAGAGGACACACCCGAA
GAGACCGAGCAAACTAACCAGCTGCCCTCTACGAACCAGCAGCATGGAACTCAGAATCTA
CCCATCAACATCCCCGCCTCCGAGGAAGACACAGTTCCCGACGACCAGGAAACGGAACAG
GCTGACGTATCCATGAACGGCTTTGACACCCAGCCTGACGCACTTGCTCACCCTGAAGTA
GCCCCTGATGTCACCCAGTTTCTTCCCCCCGCTACCCCGCTTAACACCGAGGCCACCAAC
AACGGCCTTCCCCACGACCACACCAGTCCCAACACGACCAACCAAACACAACCCCCCCCC
GGAAGTATCCACGAGGGCCGACCCCGAGGAGGGCACACCACCTCCAGTTTCTCTGGCGAG
CCCTCTCACACCACGCTCGGCAAGAAGCACATTGCGGTCTTCCAGACCGCCTCGAGCGAG
GTTCCGGTGCAAATCCTGAACCCGGACAGGTCGGAGAACAGACTCTGCTGGCTGCCTTCT
CAGGAGGTAGCAAAGTTCATTGACGGGAGGTGCCCGACATTCCTGTCTACATGCCACTTC
AAAGTTTTCCACGACGGTGCGACACTCAGCTCGGTAGACGAGATTGTAGAACCCCCGAAC
AGTCCCCCGAACCCCCCTAGGGTGACCACTCTCCATGAGGTGGACACAATGCTCCGACCG
GGGCAGAACCAGTAAGCATGTCTTTCACCTCTACTACCACCCCTTCTAAAGCCCCATGTA
AGAGCACCCAGGCCAAAATGAAATCTCCGAATGTTAAAGTCATCACGGCTAACATCGGCG
GTTTTAAGATGGCGGAAGCGCTTAACCGATTACCCGACACCATTGTAAACATTATTCGAA
CTACTCACTACCCCGATCTCGTCCTTCTTCAAGAGACGAACTGGGTGGACTCCTCCCTAC
AAACCGCTCAACAAATCATTTCAAACTCGCCCTACCCGGGGGGCAGACACTACACCCTCC
TCGGCTCCACAGCTGGTGTTTCTAATAGAAGCGTCGGCGTGGGGCTAGTCTATTCCGACA
ACGTCACCATCACAAACTTTACAACAGTTTTTGAATACTTCCCAGCCCTAGACAACAGAC
TGTGTTTGGCCGACGTGCACATCAAAGGCACCGACAGACACCTATCGCTGATCAACGTAT
ACGCACCAAACGAGCAGGGAGCCTCCCCCTTCACTAACCGGCAGTTCTACCAGTCACTAG
ACGACTATCTACGCCTCCATCCCTGCCAATACCCCCTGATAGCGGCAGGCGATTGGAACG
CGGTCGCCTCCAACGACGGCAGGATTGGCGAAAAAGTGACGACTCACCTTAAGGACTTCT
TAGCTAACTGGGACTTACTAGACACCTACACTCTAATCAGCAAACACAGAAAAGGCCTCT
ACACTCACACCAACAACAGCCGCGGAGCTGGCAGGCGCCTGGATCAGCTGCACATCTCTT
CGACACTCTCACAGTGGATCAAATCCACACAACTGGTAACCAACAAGCAGGGTCACAACA
TCACGAAGTCCTCTCACCACGCGGTCCAATTCGTCTTTAACTTTGGCAACCTCACCCAGC
GACAAGACAGAGGCCCAGGCACCTGGAGGATGCCCTGGTGGGTTTTTGATACAGAGTACA
TTGCTTGGCTCAAGTTCCACGTCAAATCCATTCTGAAGCGATATGGTCCTTTGAAGCCCA
GCCTGAAGCTGCAATGCCTGAAAGAAAACATTAAGGTCACCATCCAACAGGAAGCCAAAA
ACCGCGCACTTCGAGATTCCAACCACCCAGACAACAGACGCCGCGAGGCCCTCATGGCAA
CAGCCTCAGACTGGCAAGCCTACCCAGCTAACGAGCCATACCCGATGCTCCATGCTCGGG
TCGAACAATCCAAGCAACAGATGGAGATCCACTCCCTACGGAACCACCAAGGCCGAGTGA
AGACCGACACCTCCTCTCTCTGCGACATCTCAGCTCGATACTTTGACAACATCTTCGACA
GAGCTGCCGATATCAACGACACCGACGACAGCGCCTTTTTAGACCTCTTCCCCGAAGAAA
CCCGGAGGGTGAATACAGCTAACCCAAGCCTGGACTCGTCTTTTACCAAGGAGGAGATCT
TCGATACCATCAAGGCGTCTACGCACAACAGCGCGCCAGGGCCAGACGGCATCCCGTACA
GGTTCTACCGCGACTGCTGGGATGAGCTGGGGGACTTGATGACGGACGTCTACAACGAAG
CTGGAGCCGACTCGCCCATCAGCACCGAACGCAACACCGCTATCATCAAACTACTGTACA
AGTCGGGAGATCAGGCCGACATCTCCAACTACAGGCCTATTTCTTTGATCAACACAGAGG
TGAAGATCTACACACAGCTCATTAACAAAGCCATCCAGAACATTCTTCCGGACAGCATTC
ACGGCGCCCAAAACGGTTTCGTACCGGGTCGACACATCACTAACAATCTCGACACCATGG
ATCATTTTTGCAACGCCTACTCCCAGCTGAACATGGGTTGGGTCGTAGGATCACTGGACT
TCCGGAAAGCCTACGACACTATCAGCCAGAGTTGGGTGATAAAGACGCTTCGAAATGTGG
GTGTCTCGGAACTGATGATCAACCGTATCCTAGCTGTACAACAGAACGCAGTAACGAGAA
TCAACATCAGAGGTGTCCTATCTCGCCCAGTCCGCATCAAGATCGGAGTGAGACAAGGAT
GCCCTCTCTCTCCAACCCTCTTCATCATCGCAGTAGACGCACTTGTGCGTCGTCTGGACC
GAGAGATGTTTGGACTGGCCCCAGGCCTGCCACTATCCCACCACCACACCACTGGGCACA
GGCCGCCACAACCCCCTACTCACCCGGAGGCAGTGGCAGCTGGACACATGAAGGTGTCGG
CTTTCGCGGACGACATAGCGGTGTTCCTCAACAACATCCAGGACGTGGCCACGGTTGGTA
GAGTGCTCTGCCTCTTCCAACGGGTCTCAGGCCTCACACTAAACCCGTCAAAGACGGTGC
TTCAGAAGATCGGCCCCCCCGATTGTTTTGTTCCACTAACCTTTATTGACGCAGAATGGC
AGCGAACAATTGACGCCACCTGGCCAACCGACAACAACACACGACAGGCCCCGACGCTCC
GGACATCTGACAACATTTTCCGGTACCTCGGAGTACACTTCGGAAATCGCGAAAGGTTGG
ACACGCACTACGCTCAGATCAAGGAGGACCTCAAGGAGTCGCTGCGACGCCTTTCACTAT
GGGGTCTCCCCTATTACAGCAAGGCGTGGATGATCAACATCTACTTCTTCTCGAAACTGA
ATTTCCTTGGACCCTACGTCAGCCAGATCGACAACACCTTCATCCGAGAGCTGAACGAAC
TAGCGTGCGACAAGATCAACAAATTATCACCCGACAAAACACGCAAAACCTTCAGCAATG
GTTTCATCCAAACTCCGGTAGGCAGAGGAGGACTGAACCTGCGGGACATGGGACGTTTCA
TGGTGTGCCTGAAGGCCGCTCGGGCTTACAGGTTCTTCCATGGCTCATCGCCGGCCCTTT
GGGACTGCACCTTCCAGTTCTACAGCAGAACTCACAGTCTCACACAGGAAAAGCCACACC
AGCGCGTCGACTGCCGCTTTCCGACAGGCCAAGCTTGGGGCTACGCAGCCTCCCCCACCA
TGCGAGACGCAATCAGAGCTTCTTTCGAGCTCAACAAGCCCCTCACCGCGGAACATGCCA
ACCCTCGAGAAGATCACGAGCCCTCTACAACAGACACAGTTAATCACAGAATCTGGGAAC
GAAACCAGGTGAACGTGAGAGCAGCAGAATCTTTCCGGGAAGCACACGTCGACATCGCAG
CCGCGAGACGATACCATCCGGTCAGAATGGTGTCCACAGCGGAAATCGACCACCTCCGGT
GGAGCATGGGACCACTTACTCTAGAGAACTTCATGTTTCACAAGACCTCGTCTCCCGACT
TGCCAAACTTCCCACACACACTTGCACGACCGAAGAAGTGGACTCAACGAAGCGACTACG
GGGGCATCTCTGACGACATGGTCTGGCAGGAGGTAATGCATGACCTTCGAAAACACTACA
TCGCCGACGCCAACAAAGCACAAGTTCTTCACCTCATGCGGATATCTCGACTTCCGCTCG
TGAAATGGAGATACCCTGACGACCACGTTTTCACCAAGAAGAATCCAGGATGCGGGCTCT
GTGATAAGGCCATCATTCAGGATCTGCACGAGCATATCTTCTGCAAGTGCGAAGTTCTTC
TTTCCATGTTGACCAGGATGAAGATTCCGTCAGTGGACTCTCTAAAGGACTGGATCTTTA
CCGAGTCGAAATGTGGAGTACTCCCCTCTTTCCCAGGGCATGTGAACAGTGACGCCCCCC
GGAAACATCAACAAGTCAAGACACGCAAATATCTGCGGGAATTGGCTTATGGGATCTGGA
AGATGGAGAGATCCCTCCGGTACTCAGGGGACGACGCCACCCTGGGACATGTCCAACAGG
GTTTGCTTCAATTCCTGAAGGAAGCCCAGATGTGTTTCTACGATGGACAACCGCCAGCAC
TTCACGATGAGCGAGAGTAGACACAGTAGCAAGCGTAAAAGGCGGCCGAGGCCACCGAGA
GAACAGCGTAGCAGGGCGCGTAGTCACCACAGGGGACGCAGAACCAAACCAATGACGAAG
AAGAACCACAAGGAGAAGTTTTCAAAGGCAATGCAAATGAAGAGGGCAATGGAAGGATTG
AGATTAGAGAACTGGAGACTGGAGTGGCGTTTTCCCGATGAACGAACAAACACGCGAAGC
TATGTGGACCAACATACAACACGGACTGAACCAGGTTTTTTTATGATTTTTTTACTGGAA
ATAGGTACGTGCCAAGTTGGACCATGACACTAAACGTGTTTAATTAGTAATATTCGTGTA
AGCGTACATTCATTTCAAAGGTTATTCTTTCACGGCAAAGTTATAATTAAATGAATGTAT
ATGCAGAAAAAAAAAAAAAAA
Locus sequence
Up/downstream sequence
Protein length: 715 aa.
Gene: Ylli_gag
Protein length: 1301 aa.
Gene: Ylli_pol
Browse the locus neighborhood with JBrowse:
ATG