YALI0C02475g

Overview

Description similar to uniprot|P53730 Saccharomyces cerevisiae YNR030w ECM39 involved in cell wall biogenesis and architecture singleton
Locus type CDS
Locus tag YALI0C02475g

Location

Species Yarrowia lipolytica Positions 348347..350125
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 1779 (nuc.)
Previous locus YALI0C02453g Next locus YALI0C02497g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C02475g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C02475gYALI0C02475g_mRNA-001YALI0C02475g_CDS-001

Nucleotide sequence

 

>YALI0C02475g
ATGCAATTGGACCATTTCGACTACATGGTCATTGTGATGGTGGGTTTCTACCTCACTTTG
GCGCCTTTCACCAAGGTGGAGGAGTCCTTCAACATGCAGGCCATCCACGACATTGTCTAC
TTTGGCGTGTCCGATCTGTCCAAGTACGATCATGTTGATTTCCCCGGGGTGGTGCCTCGG
ACGTTTGTGGGAGCAGGAGTGTTGGGTATCATTGCCCGAGGTCTCAAGGGAGCGGTTTTC
AAGGGAGCGATGAAGTTTGACATCCAGCTGCTGACTCGAGGAGCTCTGGGAATCATCAAT
GCGGTGTGTTTCATGTTTCTGAGACACTCCATTGCCGACTTCTTCACTCTGTCGCGGTAC
CCCAATCTGGGCAACATCATTGCGTCGTTTTTCGCCGCCTTCCAGTTCTCCCAGTTCCAT
ATGATCTACTACGCCTCCCGGACTCTGCCCAACATGATGGCCATGCCTCTGGTTACTTTT
GCGCTGAGCAAGGCCGTGGCCGGCGAGTTTGAGAGCACAATCACGCTGCTGGCTGTCGCC
GGTTCGATTTTCCGTGTCGAAATTCTCCTCCTAACTGCCATCTTCACGGTCCTGTGTCTT
GTGCAGCGACGAGTCTACCTGTCCAAGGCCGTGGTTGCCGGTCTCAAGGGCGCTCTCATC
GGGTCCACAATTTCAATCGGCGTGGACTCGTACTTCTGGCAGAACGGAACTCCCTCGTTT
AACCCGTTGGAGCAGTTCAAGCTAGTGTTCCCCGAACTCCAGGGCTTCATTTTCAACGTG
ATTGAGGGCAACTCGTCCGAGTGGGGAGTCTCGCCTTACTCGCAGTATTTCCTTGTCGAC
CTGCCCAAGCTGATTCTCAACCCTGTTGTCCTCCTGCTCATTCCTTACGGATATATTAAG
GACCCCAGCGGAAAGAGAGGCCACCTGCGACTTCTGGGGCTCACTGCCACTATCTACGTG
GCCATCTACTCTCTGCAGCCCCACAAGGAATGGCGATTCATCATCTATACCGTCCCCATC
TTCACTCTGCTTGCTGCTGTAGGAGCCACTTCCATCTGGGAGAAACGAAACACCAACAAA
ATCTACATGGTGGGCTCTGTGATAATCATTCTCACCACCTTCTTGACCTTTGTTCTTTCC
TGCTTCATGGGTTCGATCTCGTCTTTCAACTACCCCGGAGGATTTGCCCTGGAGGCCTTT
CATGATCTGCCCGAGGTGGCTAAACACACCTTCCACTTTGGAGAACGAGGTCAGGCCTAC
GTGGACCCCATCATGGTCCATGTCGATGTCCCCACCTGTATGACTGGAGCTATTCGATTT
GGCGAGTCTGAAGACTTTACAGAGTCCGGAGCCATCATCTATGACAAGACGGAAGATAAG
GAGACTCTGGAAGACCTGTGGGACGGATTTGACTATGTTATCACTGCCGAAAAGCGGCCC
GACATGGATCTCGCTGATACCATTACCGCTCTGACCCGGGTTGACGCCAAGGAGGCTCTC
AGAACCTTCTCTGCTGCCGTCAAGGACCCTTCTGGCACTGCCAACGAGTTCGTTCGGGTG
CTCAAGCTGGCTTTTGGAGAGGACGTCAATGATGCCTACCTGGAGCTGGAAAAGGTCTGG
GATCGAATTGTCGTCACTGAGCCTGCTTTGTTTATTTATAAGAGGAAGGAGAGCCAGGAG
GTTTAGGGAGTTGACCCGTTAGCAGCCCGCTCCTGCTATTCCACTTCCTCCGTAACAGAA
AATCGTATAATATAATTATTTAATTCTATTGCACCATGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C02475g_CDS-001

Protein length: 562 aa.
Product: Alpha-1,6-mannosyltransferase localized to the ER, putative

>YALI0C02475g_CDS-001 MQLDHFDYMVIVMVGFYLTLAPFTKVEESFNMQAIHDIVYFGVSDLSKYDHVDFPGVVPR
TFVGAGVLGIIARGLKGAVFKGAMKFDIQLLTRGALGIINAVCFMFLRHSIADFFTLSRY
PNLGNIIASFFAAFQFSQFHMIYYASRTLPNMMAMPLVTFALSKAVAGEFESTITLLAVA
GSIFRVEILLLTAIFTVLCLVQRRVYLSKAVVAGLKGALIGSTISIGVDSYFWQNGTPSF
NPLEQFKLVFPELQGFIFNVIEGNSSEWGVSPYSQYFLVDLPKLILNPVVLLLIPYGYIK
DPSGKRGHLRLLGLTATIYVAIYSLQPHKEWRFIIYTVPIFTLLAAVGATSIWEKRNTNK
IYMVGSVIIILTTFLTFVLSCFMGSISSFNYPGGFALEAFHDLPEVAKHTFHFGERGQAY
VDPIMVHVDVPTCMTGAIRFGESEDFTESGAIIYDKTEDKETLEDLWDGFDYVITAEKRP
DMDLADTITALTRVDAKEALRTFSAAVKDPSGTANEFVRVLKLAFGEDVNDAYLELEKVW
DRIVVTEPALFIYKRKESQEV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG