YALI0C01463g

Overview

Description some similarities with uniprot|P25364 Saccharomyces cerevisiae YCR065W HCM1 Forkhead transcription factor involved in cell cycle specific transcription of SPC110 encoding a spindle pole body (SPB) calmodulin binding protein
Locus type CDS
Locus tag YALI0C01463g

Location

Species Yarrowia lipolytica Positions 205904..208654
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 2751 (nuc.)
Previous locus YALI0C01441g Next locus YALI0C01485g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C01463g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C01463gYALI0C01463g_mRNA-001YALI0C01463g_CDS-001

Nucleotide sequence

 

>YALI0C01463g
ATGGACGAAGGTATAACCCCCATCAAGTACAACACATCGGCGCTGCCAACGCTCAACTCT
AACCTGCTCAAGTCCCTCAGCTCGGTCCACCTGCCGCCCCCTCCCAGCACTCGCGCCATG
TCGTCACGTACCTCCTCTTCAAAGATGTACTGCTACACCCCCGAGTCCAGCCAGGGCAAG
CAGCAGCGCTACAACCAGAACGGCCAGCAGCAACAGCAGCAACAGCAGCAACAGACGCCA
GCAGACTACTCGCCTCATCTCGGCGACGTGAACCTGTCCATGTCCAACGTCATGTATACG
CCCCCTTCGTCGCAGCAGCGGTTTGTCAACACCAACCAGAAGCAGCAGCACAATAACTCT
CAGCAGCCGTACTTCACGCCCACAGTGCCTCAGTCTATGCGATACAAGGTCGATAAGGAG
AACGTGCCGCTCTATTCGCCAGACCTCAAGGCCTCCACCAAGCCGCCGCAGCCTTTCTTC
TGTGTCGACAACAAGGACGCCAACAGCAACAGCGCCTCACCCGTTGACGCTCCAGCCAAG
CTGCGGATTCCCGAGCCTAACGAGTTCCCCGAGATTGTGGACGAGGGCACCAAGCCGCCG
TTCTCGTACGCACAGCTCATCGGCATGGCCATCCTGCGGTCGCCCAACCGCAAGCTCACG
CTGTCACAGATCTACGAGTGGATCAACACCACGTTCAAGTGGTACTCGCAGCAGAAGAGC
GGATGGCAAAACTCCATCCGACACAACCTGTCGCTCAACAAGGCATTCAAAAAGCAGGAG
CGCCCCAAGAGCGACCCCGGAAAGGGTAACTACTGGATGATTGAGCCGGGCATGGAGCAG
CAGTTTCTCAAAGAGCGTATCAATAAGAAGCCCGCTCCTCAGCAGGAGTCTCGATACTCG
CGAGAGGCCATGTCGCGCTCCAACAGTGACTCAATGGGCCAGGGCTCTTTCGGTGAGTCC
CACGGTCCTCCCCCCAGCCAGTTCATGGGTGTCATGTCTCCTTTCAAGGCCACTCCCATG
CAGAACGGTGCTGTTCAGGGCCAGATTCCCATGCAGATGCCTACGTCGATTAGTCATCAC
ACCCAGCAACAGCAGCAGCAGCCTCAGCAAGTCCAACATACACAGCAGCAGCCTCAGCAA
CAGCAGCAACACCATCAGCAGCACCAGAACCAGCATCAGCATCAACAGGGACAGCAGCAG
CACCAGGTGCCGCACCATGGACTAGGCCAGAGCGCGCCTTTGCACGGAGGAATGACACAC
AGCGACTTCTCGCAGGCATTCCCCCACTCCCACTCTGCATTGGCCCACGGGCTGGAGCTC
CATGCAGCCATGCATAACCCCAACCTACAGTCGCCGCTTCGGCTCAAGAAGCCCGACGAC
AGCACCGACGACGAGGACGAGGACAACGCGTCGAGCCAGGGCGTCAGCAGCAGCAACACC
AGTAGCTTGGGCGAGCCAACTACTGACGCCATTCTGTTGCAGACCCCGCAGCGAGGTTCT
GTGCTTGACCAGCTCCGAACTCCTGAGAAGAGCACTCCCGGCAAGCGACGGGGCACAAGC
ACTCTGAACTCCGGAGACTCGGACTCCCATATTGGAAGCGACGGGGCCAGCGATCTGCGA
CCCACGGCGCTGGCCCGATCTGTGAGCGAGCAGTCGTACCCGTTTGCGACTCCGGTGCGA
AAGTCGCTGGGCCTCGACTCCCTCAAGCATTTCTCTTCCACCTCGCTGTCTCTGGACTCG
CCCACACGGGGCAAGCACTCTCTGGACGACCTGGACATGTACCCCATGACCCACAGTGCC
AAGCGGCGGATGCTCAACAGCGGGCGAGCCGCTCACATGCTCGGTGGAGGTGTCAGCCTG
GGTACACTGAAGCTTGATGCTCAGTCGCAGTCCATGATGCCTCCGACGTCATGGTCTTCC
GGAACTTCGTTTGGCTACTCGTCAATGACCGAGTTCTCTTTCGGACGGTATGGCAATTCG
CCCGTCCGAGGTGGAGGCACTGGCGGCAGCAACGCACTCAGTGCTGTGGGCTCGGCTGCT
CTCTCCACAGCCGCTGCTCTTTCTCCAGTTCGTAACGGAGGCCTTACACTGGCCCCTCTA
ACCCCCGCTACTACACTGGCCCCTCCCGTGTCGAACCTCCCGTCCTTCACCTCTCCTCGG
TTCCGGTCTCCTCTGCATAAGTCTGTTCTGTCGGACTCCCCCCGAGGCTCTCTGATGGGT
CCTCCTGTAACATCTCGGGAGCTGGACGATCTGGCCCATTCGCCTTCGTCGCGACGTGTG
CAGGCCTTGCTGGATGAGGACGACCACATTTCCCGCGCGTGCTTTGGCTCGCCTGGCAAG
CGGGCGGCTCGATCGCAGCAGTTCCTGGACCACTCGGTGTTATTTGAGCACTCTGGCGAC
CACGTTGACGTGTTTGGCGTGGATGTGTGTCAGGTGGTTCGACGGGCAGTGGAGAATGGC
GGCGCTGACGGAGGCAAGAGTGCTTCTCCCGGATCTGGTAACTGGGATTCTATTGATTTT
CGACGAATGATTATTGAGGAGGGTATTCGTCTGGACAGTCCCATCAAGACGCAGGACGGG
TACCGGATCGGTCTTTCTCCCTCCCGGCTCCGACGATGAAGCGTGTCTGCAAGGCACGGT
TCAAGCGAGTTTGGAGTCATTTCCTCTCACATCAGACCCCTTTTCTATTTATTGTGACAT
TATGCACGGGCAGGTAATTTATGAGTATATTAACATATTAACATCTATATA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C01463g_CDS-001

Protein length: 873 aa.
Product: Conserved hypothetical protein

>YALI0C01463g_CDS-001 MDEGITPIKYNTSALPTLNSNLLKSLSSVHLPPPPSTRAMSSRTSSSKMYCYTPESSQGK
QQRYNQNGQQQQQQQQQQTPADYSPHLGDVNLSMSNVMYTPPSSQQRFVNTNQKQQHNNS
QQPYFTPTVPQSMRYKVDKENVPLYSPDLKASTKPPQPFFCVDNKDANSNSASPVDAPAK
LRIPEPNEFPEIVDEGTKPPFSYAQLIGMAILRSPNRKLTLSQIYEWINTTFKWYSQQKS
GWQNSIRHNLSLNKAFKKQERPKSDPGKGNYWMIEPGMEQQFLKERINKKPAPQQESRYS
REAMSRSNSDSMGQGSFGESHGPPPSQFMGVMSPFKATPMQNGAVQGQIPMQMPTSISHH
TQQQQQQPQQVQHTQQQPQQQQQHHQQHQNQHQHQQGQQQHQVPHHGLGQSAPLHGGMTH
SDFSQAFPHSHSALAHGLELHAAMHNPNLQSPLRLKKPDDSTDDEDEDNASSQGVSSSNT
SSLGEPTTDAILLQTPQRGSVLDQLRTPEKSTPGKRRGTSTLNSGDSDSHIGSDGASDLR
PTALARSVSEQSYPFATPVRKSLGLDSLKHFSSTSLSLDSPTRGKHSLDDLDMYPMTHSA
KRRMLNSGRAAHMLGGGVSLGTLKLDAQSQSMMPPTSWSSGTSFGYSSMTEFSFGRYGNS
PVRGGGTGGSNALSAVGSAALSTAAALSPVRNGGLTLAPLTPATTLAPPVSNLPSFTSPR
FRSPLHKSVLSDSPRGSLMGPPVTSRELDDLAHSPSSRRVQALLDEDDHISRACFGSPGK
RAARSQQFLDHSVLFEHSGDHVDVFGVDVCQVVRRAVENGGADGGKSASPGSGNWDSIDF
RRMIIEEGIRLDSPIKTQDGYRIGLSPSRLRR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG