YALI0B21978g

Overview

Description weakly similar to uniprot|P25038 Saccharomyces cerevisiae YOL023w IFM1 translation initiation factor 2, mitochondrial
Locus type CDS
Locus tag YALI0B21978g

Location

Species Yarrowia lipolytica Positions 2876079..2878655
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 2577 (nuc.)
Previous locus YALI0B21925g Next locus YALI0B22000g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21978g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21978gYALI0B21978g_mRNA-001YALI0B21978g_CDS-001

Nucleotide sequence

 

>YALI0B21978g
ATGTTGAGTAGAAGTTTGTGGAGAGCCCGGGGATTCCACTCCTCGGTACAGGTTGCAGCC
AAGCTCGGCTCCTCGCGTTTCCGAAAGACCGAGCCAGCAGTCCCGGCTCCTGTCAAGGAA
GCTCCCTCTGTGGATCAGGCGAAGGCTCTGTCGCGAAACCAGCCTCGAAGTCAGGGCCAG
AACCAGGGCCAGAATTCGAACCAGAATCAACCCAGAGGTCAGAACCAGCGAGGTGGTCAG
AACCGAAACAATAACAACGGCAACAAGAACAATCAAGGTACCAACCAAGGTCAGAACCAG
GGCCAGAACCAGAACCGGAACCAGAATAGAAACAACAACAACAACAACAACAATAACAAC
CGACAACAAAGATCTCAGAAGCCGACTATCAATCTTGCCCAAGCTGAGACGCCGTCGCTG
ATGAAAATTATGAGAAAGCAGGAGGAGGCCCGTGCAAAGAAGTCATTCAATACCCCCAAT
ATGTCTGGTCCTGGAGAGAAGAAGGGAGGAGAGGGAGGAAAGAAGTCACATGAAGCTGGA
AAGAAGGGGGAAGAGAAGCCCAAGAACGTGTTCCTGAGACACGAAGACTTTGTTGTCGCT
ACACCAAAGACAGTTCCTCCTCCTCCAGTCAAGGAGAAGAAGGTGAAGGAAATTGAGATT
GTGCGTCCACGATTGGCTATTCCTTCCTTCGTTTCCATCTCCAACTTGGCCACTATTCTG
CAGGTTTCCCTTGAGACTCTCTCCAGCACAATGGTGGAGCTTGGATTCGACCAGGAAACC
ACTGACCATAACCATGTGTTAGACGGTGAAACTGCCCAGCTGATTGCTGACGATTTGGGC
TTCGATGTGTACACCAATGAGACTCAGGGAGTCGATTTGTTCCTTGCCCCCAAGCCCTCT
GCTGACGAAAAGTCGAAGTTGCCTCTGAGACCTCCGATTGTGACGATCATGGGCCATGTT
GACCATGGTAAGACCACTTTGCTCGATTACATTCGAAAGTCGTCCGTGGCCGAGAAGGAA
CATGGAGGTATCACGCAGCATATTGGCGCCTTCTCTGTTAAGGCTCCCAAGTCCGGCAAG
CAAATCACCTTTCTTGATACCCCTGGTCACGCTGCTTTCCTGAAAATGCGAGAACGAGGA
GCTACCGTTACCGATATTGTTATTCTGGTCGTTGCAGGAGACGATTCTGTCATGCCTCAG
ACCAAGGAGGCTATCAAACACGTTCATGCCGCGGGTGTCGAACTTGTGGTTGCCATCAAT
AAGTGCGACAAGGAGTCTGTTACCGAAGAGACCATCCAGAAGGTCTATTCTGATCTCGGA
GCCAATGAGGTGTATGTCGAGGACTATGGAGGAGACATTGCATGTGTCCAGGTTAGTGGA
AAGTCTGGTCTTGGAGTTGACACTCTGGAGGAAACTCTGGTTGCTATTTCCGAGGTTCTG
GATCTGCGATCTTCGCCCACCGCCAAGGTCGAGGGCATTGTTCTCGAGTCCCAGGTCAAG
AAGGGTGTTGGAGCCACTGCAACTGTTCTTGTCCACAACGGTACTCTCAAGCCCGGCCAG
GTCATCTGTGCAGGCACCGTCTTTTGCAAGGTCAAGGCCATGAAGGACTCCTCCAACAAG
GTTATCAAGGAGGCCGGTCCTGGTACTCCAGTGGAGGTAACAGGTTGGAAGGAACTTCCT
GCCTCTGGAGACCAGGTTTTGCAGGCCGAGAGTGAGCAGCAGGCCAAGCAGGTGGCCGAG
AATCGACAGAAGCGAGCTCAGCTCATGCAGCAGATGGACGATATCAAGATCATCAACGAG
AAGCGAAAGCAGCAGAAGATTGACCAGGAGGCCGAGGAGAAGCGTCTGGAGCGAGCCAAG
CTCGGTCTTCCTCCTATTGAGGAGGATGAGCCCGAGGCCAAGTGCCAGCTGGCTCACTTT
ATCGTTCGAGGAGACGTCCATGGATCAGTTGAGGCTGTTTCCGAGTCCATTGCCGATATC
GGTAACGACGAGGTCCACGTCAATATCCTGTCTCGATCTGTGGGCCCTCCTACTGCCAAC
GATGTTGAAATTGCCAGGACTGCGAACGCTTCTCTGTTGTTGTTCAACGTCAAGCCCACC
AGGGACGTGATTCTCAAGGCTCGTCAGGCAGGCGTGCCAATCATCGAGCAGACCATCATT
TACCGTGTAATTGAGCACGTAACCGAACATGTGACCTCACTGCTCCCCAAGATCATCCGA
GACAAGGAGATTGCTTCTGCTCAGGTGAAGGATATCTTTGAGATTTCCATCGCCAAGAAG
AAGGTCAAGATTGCCGGTTGCAGAGTCACCATGGGTCCTCTACGACGATCTCACACCGTC
AAGGTGATGCGAGATGGAGAGGAGGTGTTTCGAGGCACCGTTTCGTCTCTGAAGCACAAC
AAGGATGACGTTACTGAGATGGCCAAGGGCCAGGAGTGTGGTATTGCTCTTGAAAAGTGG
GACGAACTTGAATCTGGCGACATTATCATTGCCGTCGAGGACGAGGAGGTGCCAAGATAC
CTCTAGAGGTATAATTGTATATATGTATATAGATAGAAGGTATGGTATTATTAAATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21978g_CDS-001

Protein length: 842 aa.
Product: Conserved hypothetical protein

>YALI0B21978g_CDS-001 MLSRSLWRARGFHSSVQVAAKLGSSRFRKTEPAVPAPVKEAPSVDQAKALSRNQPRSQGQ
NQGQNSNQNQPRGQNQRGGQNRNNNNGNKNNQGTNQGQNQGQNQNRNQNRNNNNNNNNNN
RQQRSQKPTINLAQAETPSLMKIMRKQEEARAKKSFNTPNMSGPGEKKGGEGGKKSHEAG
KKGEEKPKNVFLRHEDFVVATPKTVPPPPVKEKKVKEIEIVRPRLAIPSFVSISNLATIL
QVSLETLSSTMVELGFDQETTDHNHVLDGETAQLIADDLGFDVYTNETQGVDLFLAPKPS
ADEKSKLPLRPPIVTIMGHVDHGKTTLLDYIRKSSVAEKEHGGITQHIGAFSVKAPKSGK
QITFLDTPGHAAFLKMRERGATVTDIVILVVAGDDSVMPQTKEAIKHVHAAGVELVVAIN
KCDKESVTEETIQKVYSDLGANEVYVEDYGGDIACVQVSGKSGLGVDTLEETLVAISEVL
DLRSSPTAKVEGIVLESQVKKGVGATATVLVHNGTLKPGQVICAGTVFCKVKAMKDSSNK
VIKEAGPGTPVEVTGWKELPASGDQVLQAESEQQAKQVAENRQKRAQLMQQMDDIKIINE
KRKQQKIDQEAEEKRLERAKLGLPPIEEDEPEAKCQLAHFIVRGDVHGSVEAVSESIADI
GNDEVHVNILSRSVGPPTANDVEIARTANASLLLFNVKPTRDVILKARQAGVPIIEQTII
YRVIEHVTEHVTSLLPKIIRDKEIASAQVKDIFEISIAKKKVKIAGCRVTMGPLRRSHTV
KVMRDGEEVFRGTVSSLKHNKDDVTEMAKGQECGIALEKWDELESGDIIIAVEDEEVPRY
L*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG