YALI0B21032g

Overview

Description similar to uniprot|Q8C128 Mus musculus Splicing factor 3 subunit 1
Locus type CDS
Locus tag YALI0B21032g

Location

Species Yarrowia lipolytica Positions 2765434..2766907
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1474 (nuc.)
Previous locus YALI0B21010g Next locus YALI0B21054g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21032g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21032gYALI0B21032g_mRNA-001YALI0B21032g_CDS-001

Nucleotide sequence

 

>YALI0B21032g
ATGAACCCCCCGGAAGGCATCATTATTCCGCCACCGGAGATCAAGGCCAAGATCGAGCGG
ACAGCCGAGTTTGTCGCCAAAAATGGTATTGCATTCGAGCACCGGATCCGGGAAAAGGAA
GGATCCAACGCCCTCTTCTCCTTCCTCAATAATGACGACCATTATCATCTATACTACCAG
TGGCGATGTGACGAGTACGCCAGCGGACGAACACGCGAGACAGACGCTAATACAGCTCAG
CTCAAGCCCAAAGACACGTCTGATCATCTAATAGAACCACCTGCCTTCGAGTTCCACACA
GTGCTTCCACCAATGTCGGCAGTGGATCACGAGGTCATCCACACCACTGCCCAACACACA
GCCGAGTACGGGCCGTCGTTTTCTATGCTGCTTGCGAAAAATGAGGCTAGAAACCCCCAG
TACGAGTTTCTCAAGCCCTCACACTCGCTGCACAAATTTTACCAGCTGTTGGTGGAACAG
TATCTCAAGGTAGGTCAGGCATTAGATGCTGGTTTCTCGGCGCTTCCTGAAAGTACACGG
ACCAACATTGAGGCTGCTGTCAAGGACAAGTTCTACGCTCTGGGTCTAGCCAAGAGGCGT
GCCGAGTGGATCTCCCACACTGAGCAGAAGAACCAAAGGGCCATCGAAGAGGCAGAAAGA
GAACGGATTGCATTTGCAGAAATCGACTGGCATGACTTTGTGGTTGCAGAAACCATTGTA
TTTTCCGACAAGGACAAGACTGGGGAGCTCCCAGCTCCCCTTACTCTTGCTCAGCTGCAG
TTCTCTTCACTGGAGCAGCGATCGCGAGGTCTGAAGCTGGAATACGCTCCCAACAGTGAC
GACGACGACGAAGAAGAGAATAAGGAGATTGTCACCAAGGGTAAGATGGAAGTCAAGGAG
GACGCCAAGGAGGAGGCCAAGGAGGACGCCAAGGAGGGGAGTACAGAGGTGGTGGTCAAG
GAGGAACCAAAAGTGTACTCTGCTCCTTCTAACATGAAAATTCGACCTGCTGGAACGTCC
AAGCTCAATAAACTCAAGAATAGCTCTCCTGCTACAGTTGTTACTCCCTCTGGAGAGGTG
GTTCCTGAGTCTTCGTATGATTCCCACATGCGAGTGTACACTTTGGACCCCAATTGGAAG
GCTCAGAAGGACCTGGCGGACTCCCGTGCACAGTCTACTAACCTGGCCACCAGTGGAGTC
ACCCATAACATGAAGCGAATGGCTGAGGCCAAGCAAGGAGACGGCGGACGGCCCACCAAG
AAGCCTGTAGTTGCGTGGGATGGACGTGCTGGATCTAGTGCTGCAGCCCAGGAGGAGGCT
ATGAGAAGGGCACCCAGCAAGGAGGAGCAGGCCAAGCAGAAGAAGGAGCGTCTGGCCAAG
GAACGTGCCATTGGACCTGGACGATAAAAGGAGATACGGGTATAAGGATATAATTAGTCG
GATATAAATCGCATTTGTATATTATTCTTATGAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21032g_CDS-001

Protein length: 469 aa.
Product: Splicing factor 3 subunit 1, putative

>YALI0B21032g_CDS-001 MNPPEGIIIPPPEIKAKIERTAEFVAKNGIAFEHRIREKEGSNALFSFLNNDDHYHLYYQ
WRCDEYASGRTRETDANTAQLKPKDTSDHLIEPPAFEFHTVLPPMSAVDHEVIHTTAQHT
AEYGPSFSMLLAKNEARNPQYEFLKPSHSLHKFYQLLVEQYLKVGQALDAGFSALPESTR
TNIEAAVKDKFYALGLAKRRAEWISHTEQKNQRAIEEAERERIAFAEIDWHDFVVAETIV
FSDKDKTGELPAPLTLAQLQFSSLEQRSRGLKLEYAPNSDDDDEEENKEIVTKGKMEVKE
DAKEEAKEDAKEGSTEVVVKEEPKVYSAPSNMKIRPAGTSKLNKLKNSSPATVVTPSGEV
VPESSYDSHMRVYTLDPNWKAQKDLADSRAQSTNLATSGVTHNMKRMAEAKQGDGGRPTK
KPVVAWDGRAGSSAAAQEEAMRRAPSKEEQAKQKKERLAKERAIGPGR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG