YALI0F30855g

Overview

Description weakly similar to uniprot|Q06704 Saccharomyces cerevisiae YLR309c IMH1 involved in vesicular transport
Locus type CDS
Locus tag YALI0F30855g

Location

Species Yarrowia lipolytica Positions 3849302..3852897
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 3596 (nuc.)
Previous locus YALI0F30833g Next locus YALI0F30877g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F30855g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F30855gYALI0F30855g_mRNA-001YALI0F30855g_CDS-001

Nucleotide sequence

 

>YALI0F30855g
ATGTTCTCGAGAATCCAGCAGAGCGTTAAACAGTTCACGGATGAACTAGATGGCGCCGTG
AAAAACGCCCAGAACCAACAGGTGGCGGCGCAGCAACACGAGGCAGAAGAGCGCAAGAAA
AAGCTCATGAGCTACAAGACTCCAGACGTGGAACGCATGGAGCTAGATGACAATGGGTCG
TCAGCTCCCTCCACCGAAGGTGGAGCTACCGAGGCCGAGCCAGTATCGCAAACGGAGCCA
GAAGAGTACATCATTGACACTCTTCCGGTGCCTGACAAGGTCAAATCTCACCTGCGAAAG
TTCCAGCGGTATGAGGCCAAGTACCCCGATCTTCTCAAAGCCTACAGAGTGGAGAAGAAG
AAGTCCGAACTGGTAAAGAGCATGGTGGAGGATTTCGAGCGTGTTCTCCAGGAGCGAACT
CCATGCTCCGGTCTCAATGAACCTCAGGCTCTCGTTGAGTATCTTGAGAACCTCAATCTT
AAGAGCGAAATGCAGAGTAACGAGCTTCGTTCATTGTCTACGAAGGTCGACACACTCAAG
AAGGAGGTCGACGGCACCAAGAGAAAGGATCAGGACACCATTGAGAAGCTCGAAAGCGAC
GTGGCTCGACTCACATCTGATCTGAAGGATCTGGAAGCTGAGAACACCAAGCTAAAGGAG
GCTGAGCCGGCAGAATCAAAGGCCACCGACACAACCAGCGAAACCCGTGCTGAGCTGGAG
CTTAAGGATGCAAAATTGGCCGAACTGCAGACCAAGTTAGATGGCCTCAAGACCAGGGTG
GGTGAGCTGGACAATGTCAAGGCTCAGGAGGAGAAGGTAAAGGAGCTTGAAAAGCAGCTG
GACGAGGCTAAGGGTGAGGCCAAGAAGGCCGAAGATAAGATCAAATCCGCCGAGGAGATG
GTCAAAGCGGCTGAGGACAAGGCTAAGGAGGCATCAGACAAAGCTGACCGCTCTACAGCC
AGCAAGGACTCCGAACTTGAGAGTCTCACAAAAACATTGAACAAGATCAAGGACGAAAGC
AAGGCTGCATCGGAAAAGCATCTTGGCGAAATCAATAACTTGAAGGAACAGCTGGAGAAG
TCCAAGACTGTGTCAGAGGAGCTAGAGACTGCACGAAAGGAGCTTGCTGACGCCAAGTCT
GCCGCCTCTAAGGCTGATGCTGAGCTCCAGGAGAAGCTGGCTGAGATTGAGAAGACTCCT
GACAACTCTGCTGAGCTGGAAAAGCTTAAGACCGAACTTGCCGAGGCCAAATCCAATGCT
GATAAGACTTCCAATGATCTGGCAGGCAAATCGAAGCTGCTGGAGGGTTTCCAGAAGAAG
CTTGGTGAAGCTAACAAGGCCAAGGAGGATCTGGAGAGCGAGCTTGCGACGGTCAAGGCC
GCAGCTGCGTCTGCTGTTGCTGCTGCCAATACCTCTCCCGGTGCCACTGGTGGTAAGGGA
AAGAAGGGCAAGAAGGGAGGATCCCCTGCACCCGATAACAATGCTCAGATCAAGGTGCTG
GAGGATGCCAAGCAAAAGCTTGAGAAGGACCTTGCTAATGAAAAGTCCGAGGTGGAGAGT
CTACGGGACCAGCTCAAGGAGATTGGAAACGATCTTGTCGAGGCTCAGAAGTCTAATAAA
AACAGCGAAGTCAAGGATGAACTCGAGAAGGTGCAGAAGAAGCTCACCGAGAAGGAGGAA
GAGATTGAGGAGCGTCAGAAGGATGTAGCTGAGCTCAAGAAGGAGATCGAGGATCGAAAC
AAAACCCATTCTAAGCTTCAAAAGGAGGTTGATGAGCTCAAGACCCAGTCTTCAAAGTCT
TCTGAGGATGCAAAGTCTTTGGAATCAGCCAAGGCTGATCTTGACAAGACAAACAAAGAG
CTGACTGCTGCACTGACGAAGGGCAAGACCTTTGAGGATGAGGTTGCCACTCTCAAGAAG
GAGATTGAGTCTCTCAAGAAGGATCTCGCTAGTGCCAAGGAGTCCCAGGATTCGTCCCAA
GCTATGACCGAGGAACTTGAATCTTTGAAGAAAGAGCTGAAAACTACGAAGAGCAGACTT
GCTGAGGCTGAGAAGACCACTGAGGAGCTCAAGACTGTCAAGGAGGAGGTTGAGGAGCTG
AAGAAGAAGCTCGAGACCACTGAGCAGCATCTTTCTGCCGCCGAGGACTCTCACGCCCAC
TCTGCCAAGCTCAGTCAGGACCGATTCAAGGAGCTCGGCACCACCAAGGAGCAGCTTTCA
AAGCTGGAGGAGCAGCTAGGATCTGTCAAGGCAGAGCTGAAGATTGCCAAGGACGCCGAG
ACCACTTTGGCTAAGCAGACTGCTGAGCTTGAGAAGTTGGTTGCTGCCGAAACCAAGCTC
AAGAAAGATCTTGCTGCTGTTACTGCATCTTCATCCGACTGGGAGGCGAAGTACAAGGAG
GCAGATCTGCGGTGCAACAAGATCGAGAGCCGCATTACTACTCTCAAGACCACCCAGGCT
CGACTGGAGAAGGAGAAGAAGGATGCTGTCGCCGAGAAGGATGCTCTTGCTACACGTGTC
GAGCAACTCGAGAAGGAGCATTCTGCATCTTCCGAGTCCATTTCCAAGTGGACCCGAGAA
AAGGCTGCTCTTGAGAAGGAGCTGACTGAGGCCAACAACGAGGCCAAGATTAAGGAGGCT
CAGAAGGACCATGCCCTTGGTGAGGTCACCGAGCTCAAGAGCCAGTTGGAGGAAGTTGCT
ATGCGAATGAGAGAGGTAACTTCTCGTTGCGAGTCTCTGGAGGATGAAGTCTCCGATGCA
CACAAGCTGCTGCAGGAGCGAACTCGAGAGACCACAACCATGCGACGTCTTCTCAACGAG
ACCGAGGACGGTAGTGAGACCAAGATTCGAGATCTCCAGGAGCAGATTCGAGCTCTCACT
GACGAGAAGGATCAACTGGAAGCCAGTGCTGCTCAATCGTCTAGACGTCGACAGCGTGAG
CTTGAGGAGGCCCGAACGAAGACTCGAGAGCTTCAACATGACGCCGAGGAGCTGCGAGCT
GACAAAGAGCGAGCTCTCAGAGACCTCCAGGCACTCAAGTCGTCTCGAGAGTATGCTGAT
AAGGAGTCCAAGAGTGCCCAGGAGGATATGGAAGAAGCCAATGGGGTCATCCAGAAGCTT
CAGACCGAGCGTAAGGTCATGGATGGACGTCTCAGCGAATCCGAGGCCACAGTGCTGCGT
CTGAAGCAGGCCGTCGACGATGCTCAACAGCGAAACGACAAGCTGCAGAAGCAGCAGAAA
ATTCTCAACGAGGACATCATCGCTCTTCAGACAGAGAAGCACAGACTGGAGGGCAACCAG
ATCAGTAGCTCCCAGCGTCATGTGACGTCACCTGCCCAGTCACGACGATCTTCTGTGGCA
TCTAACACTTCACAACCTCCCGCTCCTGCTACTGCTACTAACACTGCGTACATCAAGAAC
GTGCTGCTCGGATTTCTGGAGCACAAGGAGCAGAGACAGAATTTACTGCCAGTAATGTCT
ACTTTGCTGGAGTTCAAGGATGGAGAGGAAGAAAGATTCTGGGCTGCGATTGGTTAGATG
GGGACAATGCAATATATTACCGCAACTATAGAAATTAATAGACAACGTGTCTTAAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F30855g_CDS-001

Protein length: 1179 aa.
Product: Conserved hypothetical protein

>YALI0F30855g_CDS-001 MFSRIQQSVKQFTDELDGAVKNAQNQQVAAQQHEAEERKKKLMSYKTPDVERMELDDNGS
SAPSTEGGATEAEPVSQTEPEEYIIDTLPVPDKVKSHLRKFQRYEAKYPDLLKAYRVEKK
KSELVKSMVEDFERVLQERTPCSGLNEPQALVEYLENLNLKSEMQSNELRSLSTKVDTLK
KEVDGTKRKDQDTIEKLESDVARLTSDLKDLEAENTKLKEAEPAESKATDTTSETRAELE
LKDAKLAELQTKLDGLKTRVGELDNVKAQEEKVKELEKQLDEAKGEAKKAEDKIKSAEEM
VKAAEDKAKEASDKADRSTASKDSELESLTKTLNKIKDESKAASEKHLGEINNLKEQLEK
SKTVSEELETARKELADAKSAASKADAELQEKLAEIEKTPDNSAELEKLKTELAEAKSNA
DKTSNDLAGKSKLLEGFQKKLGEANKAKEDLESELATVKAAAASAVAAANTSPGATGGKG
KKGKKGGSPAPDNNAQIKVLEDAKQKLEKDLANEKSEVESLRDQLKEIGNDLVEAQKSNK
NSEVKDELEKVQKKLTEKEEEIEERQKDVAELKKEIEDRNKTHSKLQKEVDELKTQSSKS
SEDAKSLESAKADLDKTNKELTAALTKGKTFEDEVATLKKEIESLKKDLASAKESQDSSQ
AMTEELESLKKELKTTKSRLAEAEKTTEELKTVKEEVEELKKKLETTEQHLSAAEDSHAH
SAKLSQDRFKELGTTKEQLSKLEEQLGSVKAELKIAKDAETTLAKQTAELEKLVAAETKL
KKDLAAVTASSSDWEAKYKEADLRCNKIESRITTLKTTQARLEKEKKDAVAEKDALATRV
EQLEKEHSASSESISKWTREKAALEKELTEANNEAKIKEAQKDHALGEVTELKSQLEEVA
MRMREVTSRCESLEDEVSDAHKLLQERTRETTTMRRLLNETEDGSETKIRDLQEQIRALT
DEKDQLEASAAQSSRRRQRELEEARTKTRELQHDAEELRADKERALRDLQALKSSREYAD
KESKSAQEDMEEANGVIQKLQTERKVMDGRLSESEATVLRLKQAVDDAQQRNDKLQKQQK
ILNEDIIALQTEKHRLEGNQISSSQRHVTSPAQSRRSSVASNTSQPPAPATATNTAYIKN
VLLGFLEHKEQRQNLLPVMSTLLEFKDGEEERFWAAIG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG