YALI0F29249g

Overview

Description weakly similar to uniprot|Q9P5P9 Neurospora crassa related to a-agglutinin core protein AGA1
Locus type CDS
Locus tag YALI0F29249g

Location

Species Yarrowia lipolytica Positions 3687827..3688958
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1132 (nuc.)
Previous locus YALI0F29227g Next locus YALI0F29271r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F29249g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F29249gYALI0F29249g_mRNA-001YALI0F29249g_CDS-001

Nucleotide sequence

 

>YALI0F29249g
ATGGACCCGCTCGAAGAAGACAAGGAGTGGGCGTCTTCGCTCGACTACCTGGACTACGGC
CCACGCCTCAAGCCGTGCGTGAAATCGCCGTCTTCATCATCCGCGTCAGGAGGTTCCAGT
TACACAAACGACTCGTCTCCATCGCTGGACGATATTCTCAACAACAACGCCCAGCCACCA
TACTCGCTGTCGGCCTTCTCTGCATATCTCTCGTCCAAACACTGCCTGGAGACCTTGGAG
TTCATCACGGACGCCCAGAAGTACGCTAGCATGTACGAAGAAAACCCGGAGGACCATTAT
CTGTGCATTCTATGGCAACGAATGATGTTGTCATACATGGAGCGAGACTCACCCCGAGAG
CTCAACATCCCCTACGAGTTGCGAGACGCATTGTGCGAGCTACCTACAAACCCAGCCCCC
AACCCCAATACCCTGAAGGAGGCGGTTGTTCAGGTCAAGGAACTCATGAAGGAAAATGGA
TACTACCCATTCATCACACAGGTGGCAAACGAGGACATGTGTTGCTGCCATCCGGGCAAC
AACTCGTCCAATGAACGGCTCTCAAGCATGCCGGCTTCTGCTCCTGAACGGCTCAGACCG
CCCCTCAGAACAGTGGTCAAGCACAGACTCACGTCGCCTGCCTCTTCAGGGTCCTCTTCT
CCTACACAGCAGAGTCCCGTCACACCACCAGAGTCACCCTCTTTGTTTGAAGTCTCGATG
CTGCACACCGAGAAGGCCACAACCAGCTGTTCTACCAGCTGTTCTCCTGCCATGGCTATT
GTATCTTCTACCCAGTTCGCAACCGCCATCGACATCACCCCCAACAAACACGGTGTCACC
AACGGCCAGCCTCCTTGTGAGAGCCCCACGGAGTCTTCCTGGAGACGAGTCAGCAAGAAA
CTAAAATGGCGAAAATGAAGCTGTTGACAGACACAGCCCCAACAATACTAACGGTCCCAC
AAAATATCACGGTTCGTGATTCCCCCCCCCCCCCCGCTACTCGACAAAGAAACAATTCAC
ACAGCGGCTATTTATTAGAGATGTACATTATTAATTATCAATATAAACAAAAGTAGATGC
TGTAGATGACTCGACTATAGTCAGTCTCGTCCACGGTTGTCTACTTCTTCTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F29249g_CDS-001

Protein length: 306 aa.
Product: Conserved hypothetical protein

>YALI0F29249g_CDS-001 MDPLEEDKEWASSLDYLDYGPRLKPCVKSPSSSSASGGSSYTNDSSPSLDDILNNNAQPP
YSLSAFSAYLSSKHCLETLEFITDAQKYASMYEENPEDHYLCILWQRMMLSYMERDSPRE
LNIPYELRDALCELPTNPAPNPNTLKEAVVQVKELMKENGYYPFITQVANEDMCCCHPGN
NSSNERLSSMPASAPERLRPPLRTVVKHRLTSPASSGSSSPTQQSPVTPPESPSLFEVSM
LHTEKATTSCSTSCSPAMAIVSSTQFATAIDITPNKHGVTNGQPPCESPTESSWRRVSKK
LKWRK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG