YALI0F29205g

Overview

Description similar to uniprot|P53720 Saccharomyces cerevisiae YNR015w SMM1 tRNA dihydrouridine synthase
Locus type CDS
Locus tag YALI0F29205g

Location

Species Yarrowia lipolytica Positions 3678854..3680128
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1275 (nuc.)
Previous locus YALI0F29183g Next locus YALI0F29227g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F29205g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F29205gYALI0F29205g_mRNA-001YALI0F29205g_CDS-001

Nucleotide sequence

 

>YALI0F29205g
ATGGTCAGTTACGCTGGAAAATTGGTACTGGCGCCCATGGTGCGTTCCGGCGAGTTCCCC
ACGCGGCTGCTCTCCATCAAGTACGGGGCTGATCTGGTGTGGAGTCCCGAGATTGTGGAC
AAGAAGATGTTGGAGTGCACCCGAGAGTGGAACGAGAAGACCAAGACGGTCGACTTTACT
GTCAGTCAGCAGGGCAAGGGAAACACTGAGAAAAAGGCCATTATTTTCCGAACCTCTGAG
GCTGAGAGAGACAAGATCATCTTCCAGGTGGGTTCGGCTAACCCCGAGATCGCCGTGGCC
GCTTGCAAAATGGTTGCCAAGGACGTCGCTGGTATTGATCTCAACTGTGGCTGTCCCAAG
CACTTTTCCATGCATGCAGGTATGGGAGCCGCTCTGCTCAAGACCCCCGATAAGCTGGTT
GCTATCCTGGAGGCCTTGGTGAAGGAGGTGGGAGAGCCTTTCAATGTTAGCATTTCAGTC
AAGATCCGACTGCTGGAGACGGAAGAGAAGACTCTGGAGCTTGTGGACAGGCTGGCTCAG
ACCGGAGTCAAAAACCTGACGATCCACTGTCGAACTACACCCATGCGACCTCGAGAACCT
GTGATTCGAGATACTTTGGCCAAGGTAGCTGAGGTGTGTCACAAGCACGGAATCACCTGC
CTTGTTAACGGAGATGTTGAAGGTCGACATGAGCTTGCTGATCTTCAGGAAAAGTACGGC
ATCGATGGAGCTATGATTGCCCGAGCAGCCGAGGCTAACGCTTCTTGTTTCAGAGCTGAA
GGTATGCTCCCTTGGCAGCAGGTGACCAAGGAGTACCTTGATATCTGTCGAGAGTATGAC
AACTTTTACCAGAACACAAAATACTGTCTGACTCGCATGATCCCCGGAAAGAGTCCCAGT
TATAAGAAAGTGGCTGCTTTGAAGGACTGCGAGAGTCTGGAGAAGTACATTAACGAGCAG
TACGAGGAAATGCTCAAGGAGAGGGCCGAGGAGGAAGCCAAAAAGCCTGAAGAGCAGGTT
ATCAAAGAGGTGGGGGAGAAGGCCACAAGGGAGGTGGAGGAATCTATGGTTTCGAACGTT
GAGGAGGCCGTTCAAGAGGCACCGGTTGAAGAGACACCTCTGGCTGCTGGCAAGCATGCT
CTGGAGGCTGAGGAGCAGACATCTGCGAAGCGGGTGGCTGTTTAGATCAGGAAAAATTAA
GGATTAGGAACTGCTCTTGTTGCATTATAGAAAGACAGTGTTATTTAAATAAGAATGTAT
GCTACAGTATGATTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F29205g_CDS-001

Protein length: 395 aa.
Product: Dihydrouridine synthase, putative

>YALI0F29205g_CDS-001 MVSYAGKLVLAPMVRSGEFPTRLLSIKYGADLVWSPEIVDKKMLECTREWNEKTKTVDFT
VSQQGKGNTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAKDVAGIDLNCGCPK
HFSMHAGMGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRLAQ
TGVKNLTIHCRTTPMRPREPVIRDTLAKVAEVCHKHGITCLVNGDVEGRHELADLQEKYG
IDGAMIARAAEANASCFRAEGMLPWQQVTKEYLDICREYDNFYQNTKYCLTRMIPGKSPS
YKKVAALKDCESLEKYINEQYEEMLKERAEEEAKKPEEQVIKEVGEKATREVEESMVSNV
EEAVQEAPVEETPLAAGKHALEAEEQTSAKRVAV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG