YALI0F28677g

Overview

Description some similarities with uniprot|Q870V1 Neurospora crassa B14A21.210
Locus type CDS
Locus tag YALI0F28677g

Location

Species Yarrowia lipolytica Positions 3646353..3650395
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 4043 (nuc.)
Previous locus YALI0F28666g Next locus YALI0F28688r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F28677g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F28677gYALI0F28677g_mRNA-001YALI0F28677g_CDS-001

Nucleotide sequence

 

>YALI0F28677g
GGCATAAGGTGGTTTTGAATGTGAGTATTTGCGAACAGAAGGGGGTCTAAATGAAGCCAA
CCCGTCACCGGGACAGCGTCAAGGCGCGATAATGCATTCGATGAGGCTCACTCTCTGAGT
CCACATGACTCAGAGATACATGACTATGTACAAGAGATGAAGAGTAGGAGAAAATGTGCT
TCTGAAACTGCACACTACACGACCAGTGTCAGTACCAAGGTTAGAAGACAGAAAGATACG
TGTTCTATGAACCCTCACGTGTATCTCTGTCGTTTTCTCAGCTCATCTACCATCTATTCA
AGCAGGTGTCATCCGCACTCCCAGCCCGCCACCTTCGCTTAGGTCACATGGGTCTTGTCA
TTTCAACGGCAGCTATCCACCGCCACCTCAACTCATACTAACATAGATGACAACCGTCAC
TACATCTCTACGCGACTCGGGAGTGTTCCGCATCCACGGGCACAGCTCTCACACTTCTAC
TACAACGTCTACGCCACACTCTACGACCAACGGCGTGTCGCTAGCTGAGCTGGCGGCTCT
GGACCACAAAACGTGGCTCTACGAGGACACGACACTCAAGCTCCGCTACCGACTGCGCAA
GGCCGCTCTTCGAAACGTTGACGCTCAAAAACGATACTACGACACAATTGCCAACCACCG
GAAACTGTGTGACTCTCAAGTTCAGAATGAGTCACGCGAATTTTACGAGCTATACAAAAG
AATAATGGCGCATGCGGCGGAACCGCGCCCTTCGGTCAATCCCGAACCCGAGCTGTCGGG
CACCCAGGAGATCGAAGTATGGACCCAGATACAGAGACTCAAGGGAGACAATGGAGTACA
GAAGGCCGCAGACCTGCTGCGAACCCGCAACTCGACGGCTCGCCATGTGTACGTCACCCT
CGCAGCTCTCCATAAGGTGGACACCGACATGGCTTATCTGGCCGCGGTGTGCAATGCAGC
ATGTCAGCACAAGGAAGGACAGGAACTAACGACACAGACACGGTCACTACAACAGCCACA
GCACAAGCCAACACACAGACAAAACAAGTCATTGCATGCATCGACCCCACGGTCTTATAC
TACCGCCACTAACAACACAAACACTACTTCTGCATCTACCACTCTCCCTACCTCCACCTT
CATTACTCAGGCGCTTGCATTCCTGAACAACAACTATAACACATGCAACTTCTCGAAACT
AGAGACTCTCATTCTCCAGATTTTCCAGGCGTCGCATCTGAGCGTCGTCGATGCAGCCAC
CACAATCCTTCGACACCTGGGTCAGTTCTCCTACTTGTGTTCAGAGTGGCTGCAGTTCAC
CAACTCTCTCTGTGCGCTGGACAAGTCGCATCTTCACACAATCGCCGAGTACTATTTTAG
CGTCTATGTGAAAGACATGTTGGTGAACCCGGAACAGTATGGCATGTGCCATGATTTCTA
CATCTCGCCAGCACAGAGATCGCAGATGAGCTGCATCCATGCCAAGCTCGTGGATCTGAG
CCATGACCCCAGCACCCGAGCCACCAACGCCATCTTTGGCAAATTCGCGTCTGGAACGCC
TCAGCACCTCGACTACAGAACACACCACAACCCCTCCTACGTGGTCTTGTCTCCTGGAGA
GCTCAAATCACTGGGAATCTCCTGCCCGCGCAACTTCACAACCTGGCACGTGTTCAACAT
CGATCCCCACACCGTCGCCTTCACCTACTTTTCACCCCTGCATCAGCTTATCAGAAACTA
TGACACTTCGTCGGAGGACGTATCTGTACTTCTCGCCCAAGCTTCCGCGAAGGAACTGTC
CCAGGGCAACTGGAACCAGGCCCAGGAGTTCCACGATGCCTCCATTACTTCAGGGGACAT
TGTGGCCCTTCATTGTGCCCTGGAGGTCCAGCTGGACCAGTACACAACTGAATGTGAGCG
ACTAGAGACTGAAGTGTGCCTCTACAATCGGTCCATTGAGAGATTCCGTGACAAGACCTC
TCAGCTGGTCAAGGCTATGGGCACTCTGCGGAACAAGGTGTGGTACGTGACGCAGGTTCG
GAACTCTGAGGTTTACGTTCGAGCCTCCTGTGTTGCACAGAAGTTGGCTGATCCCAATTC
GACGCCTTCTTTAGGCCCGGCTGCCGCCATGGGCAGCCTTGGAGGACTGGACAGCAAGTT
CAGGCGGCCAAGTTCCGTTGTCTCTACAGCCTCCAGAGAATCCTTCTTCAAAAGGCTTTC
TCTTGGGTATAACAAGCGACGACAGCGACAGAGTATCGTCTCTCTGCCTTCCGAAATTAC
CATGTTTGCACCTCCTTCGTTTGCTGGTCCAAACAAGTTGTCCGACAGAGAGAGTGATGC
CACGCGACGATGGCTAGAGGAGCAGCGCAAGCAAAATCTCTGCCAGGGAGAAGAGCGACT
GCACAGATTCTACTGTGAGGTGGATGATCTTTGCCAGCGACTCATTGCCGAGCTGGCTGC
TGGAGGCTCGCCTCTGTTCCCTGAGAAGAGAACCCCTCAATGCTCTGAAGATCTCCACCT
GTTCTTGGTCTCCATTGTTTACTCTGACCTTGGTTCTGGGTGGTTTTCTGGAAGTGAGAC
TGACCAATGGCTATCTTCTGATCTTGTAAAGGCTTGTCTGTCCGTGAAACATGCCCCTCC
AAGAGCTCTGAGACACAGGTCGTCGATTCTGAGCATTGGAACTGTGGCGTCCACCGCGGC
TGCAACTTCTTGCGAGCATCTTGGAACGCCCCAGAAGACCTGTTCCAGTCCCACTGAATC
GTATTTTTCCATGCGACCCAACGCCCAGGGTGGTGCCTTCAGGCTGACACTTCCCCCGTC
AGCTGCCACTAGCGCCTCCAGTGCACCGATCACGCCCGTTAAAGTGAACAGCTCCAACGG
AACAGCAGGAGCTGGTGCGCAGAACATGGTCTCTGCCACAGCTACCCCGTCGCCTCTGCC
TCCTACGTTTAAACTCACGCTTCCCAACACCCCCAGTGCTGCAGTAGAGGCTCGCCTGCC
CGATGGAATTCCCATTTCCATACCCTCGTGTATCACTCCAGTGATTTCCGGTGCGATTTG
CAGCAACACTCTGTCTGCTCCATTCCCCTACGACCGGGCCTACAGTGAGATTCTGTCCAA
ATTCTCCACTGTCACTTCGCCTCATGCCAAGATGCAGTGCCTATATGAGCTTGAAACACT
GGTTGTTGCCGCTCTGACTGCTGGCACGCGTTCTGATCCTGGAGCCGACGCCATTGTGGA
GGAGCTGCAAAGTCTTTTCCGCTCCGATTTGCGTCCCAAGACCCTATTCAGAGATCTCCA
AATGATTGCAGCTTTTGCACCGCTCGACAATCTGGACCTGTCTTACTCTGGCAAGATGTT
CTGGGACGTTGTGCTAGCTGCTCTTTCAATCAAGCACGAGGCTGTGGAATGCATTGTAGA
GGCAGCTAACGAGATCTTCCAGTCTACCAGCAGCGACGTTTCTCGCACACAGTCTTCTTT
CAACGGCTCTTCACCGCTCGCTGGTTTTGGAATGAAGGAGTGTGGTGAGCTATGGACCAT
TGCAGCCAAGGAAGGTAACTCGGTGGCTCAGCGGGAACTTGGAATCATGCAACTGAGTCA
CCCTGGTGAGGTCAACCTGTGTGTCATGCCTCTGACCCGGCTGAATGAGCTGTTTGAGGA
CATGCCCAACTGTTCTACGTCTGATTTGGACAAGTTGGACCCTACTCGGATGGCCATTGT
TCGACATTGGATGCGATGTGCCGCCAAGGCTGGAGACAACATCGCACGAGAATATTTGGC
ACAAGGAGGAGGTTGGTTGTAAGGAGGAGTCCAACAGTGTGAGAATTTTGTAACTAACTA
TTTATTGTGTATTTTGATGTGGGATGGCGAGCTGTTACAATAAACGGTATGGATCATGTA
TTTTCTGGAAAAATCAGTGTGGACGACAGTTCACACAGTACCAGCTGTGACTTACTATTC
AGTATATTACAGCTACTGTAGTTACTGTAGCTACTTGTAGCTATCCCCACAGAAAATTTT
CCAATATATGCACCATATGACTC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F28677g_CDS-001

Protein length: 1132 aa.
Product: Conserved hypothetical protein

>YALI0F28677g_CDS-001 MTTVTTSLRDSGVFRIHGHSSHTSTTTSTPHSTTNGVSLAELAALDHKTWLYEDTTLKLR
YRLRKAALRNVDAQKRYYDTIANHRKLCDSQVQNESREFYELYKRIMAHAAEPRPSVNPE
PELSGTQEIEVWTQIQRLKGDNGVQKAADLLRTRNSTARHVYVTLAALHKVDTDMAYLAA
VCNAACQHKEGQELTTQTRSLQQPQHKPTHRQNKSLHASTPRSYTTATNNTNTTSASTTL
PTSTFITQALAFLNNNYNTCNFSKLETLILQIFQASHLSVVDAATTILRHLGQFSYLCSE
WLQFTNSLCALDKSHLHTIAEYYFSVYVKDMLVNPEQYGMCHDFYISPAQRSQMSCIHAK
LVDLSHDPSTRATNAIFGKFASGTPQHLDYRTHHNPSYVVLSPGELKSLGISCPRNFTTW
HVFNIDPHTVAFTYFSPLHQLIRNYDTSSEDVSVLLAQASAKELSQGNWNQAQEFHDASI
TSGDIVALHCALEVQLDQYTTECERLETEVCLYNRSIERFRDKTSQLVKAMGTLRNKVWY
VTQVRNSEVYVRASCVAQKLADPNSTPSLGPAAAMGSLGGLDSKFRRPSSVVSTASRESF
FKRLSLGYNKRRQRQSIVSLPSEITMFAPPSFAGPNKLSDRESDATRRWLEEQRKQNLCQ
GEERLHRFYCEVDDLCQRLIAELAAGGSPLFPEKRTPQCSEDLHLFLVSIVYSDLGSGWF
SGSETDQWLSSDLVKACLSVKHAPPRALRHRSSILSIGTVASTAAATSCEHLGTPQKTCS
SPTESYFSMRPNAQGGAFRLTLPPSAATSASSAPITPVKVNSSNGTAGAGAQNMVSATAT
PSPLPPTFKLTLPNTPSAAVEARLPDGIPISIPSCITPVISGAICSNTLSAPFPYDRAYS
EILSKFSTVTSPHAKMQCLYELETLVVAALTAGTRSDPGADAIVEELQSLFRSDLRPKTL
FRDLQMIAAFAPLDNLDLSYSGKMFWDVVLAALSIKHEAVECIVEAANEIFQSTSSDVSR
TQSSFNGSSPLAGFGMKECGELWTIAAKEGNSVAQRELGIMQLSHPGEVNLCVMPLTRLN
ELFEDMPNCSTSDLDKLDPTRMAIVRHWMRCAAKAGDNIAREYLAQGGGWL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG