YALI0F26631g

Overview

Description weakly similar to uniprot|P39682 Saccharomyces cerevisiae YML046w PRP39 pre-mRNA splicing factor
Locus type CDS
Locus tag YALI0F26631g

Location

Species Yarrowia lipolytica Positions 3406585..3408341
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1757 (nuc.)
Previous locus YALI0F26609g Next locus YALI0F26642g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F26631g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F26631gYALI0F26631g_mRNA-001YALI0F26631g_CDS-001

Nucleotide sequence

 

>YALI0F26631g
ATGGAGTGGACCAAGTGTTACGCGAAGCTATCGGCCAATCCGGACGACTTTGAGCAGTGG
AAGAACCTGCTGGCTGCATCGCATTCGCTTGGAGGAGGTCTTAACAAGGGAACAGCAGAA
AGTGATGTGCAATTGTTTCGATTTTCTTACGACAACTTTTTGGAACGGTTCCCGCTGGCA
TTTGGATATTGGATCAAGTATGCGGAGACAGAATTCATGCTTGGAAACACTGAGGGCGCG
GAAACCGTGTTTGAGCGAGGAATAGGAACCAACCAAGTTTCAGTGGAGCTCTGGGCAGCC
TATGCCCGGTTCAAAATCCGAGTCTGTCACAATGTGGACAAGATGAGAGCATTTCTGGAG
CGAGCGGTGAGTCACGTGGGCAACCACTTCTACGCGCACTCCATTTGGGACGTGTACGTG
GAATTTGAGAGACGCGAGGCAGAGATTGCAACGGAAAACAAGCTGGCTCGACTGGCCGAG
CTGCTGTCTCGAATCATTCGAATCCCCATGCATCAGTACGCAAAGTACTTTGACTTGCTG
CGCGACATTTCGCGGCAACTCAAACCCGACGAGCTGGGCTGGATTAAGAAGGGGAAGGAC
AAGAGCACCAACAACATTTACGTCAGCACCCAGGCAGAGACCGCCCGAAGATGGGCATAC
GAACAGGCGTTCCCACGGCAGTATTTTCATGTGCTGTTCGTCAAGGAGGAGGATCTGCAG
GCATGGAGACGATATCTCGATTTCGAGGAGTCTGAGGGCAATCTGGACCGAGTGAGAATG
CTGTACGAGCGAGCCATCATCGCCACTTCTCACAACGAGGAAATATGGTTGCGGTACATT
CGGTTCATGCAGACTGTTTCTTCATCTCTGCGAGTCCATCGAGAGGAAGTCAGCACTCTG
TTTAGACGAGCATGTGCACTGCTTCCCATTGGACGCCTGGAGGTGCGACATCTCTATGCT
ATTCATTGTGAGTCTCTTGGAGAACTGGCACTTGCTCACGACATCTACATGTCTATTCTC
GGGGCATTCCCCAACTCCATACAGACCATTCTGCTCTTTGTCAACTTTGAGAGACGATAC
GCATACTCGCAGTTTCTAGCGCAGGGCAAGTCGGTCAAGAAGCAGGCAGCTGTCCACCAG
GCTGTGCAGCTGTTGATGCAGTATCTGGACGACGAAAACAGTCTGCGCAACGTCGAAAAG
TGCGAGATTCTTCAGCTATTGGTTGACTACTTGCAGGTATTCCCTGGCCAGGCTCCCGCT
AACGTAAGAGACATCCTGTCGAGGTACGAGCCGGCGCTGAAGGAGGAATACAGGTTTTGG
AAACTGGCCATGGATTACGAAGTCGAACGAGTGCATAAGCCCGTGAAGGATGTGTCTGCC
ATGTCTTTCCAGGATACATTGACAGAGCTCGCTGCTGAGGACGAATCGCAGGCTCTGGCT
GACGAGAAGACGAAGCGTCTGTCAGATATTGTCGACAAGGCTCTCGGGTCTCTATTGCGT
CTGGAAGACAAGCGGGCGCTTCTGAAACGGTTCCTTGCGTACTGCATCGACCAAGCCTCC
AATGTCAAGGACTATGAGAAGTACTCGGCAGTTTTGTATAATCTTGGAGGTGTTCAAACG
ACACCGCCTGCCGAGCCTCTCGACAAGCCAGGAGATGCTGCTGTTAGCGCTGGTGCGGGT
ACCAGTACTACTACACCAGTGGCCGCAGAGTCCTAAAAATGTAACTTGTAAGCATAATCA
TAATTTATCTGTTTGAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F26631g_CDS-001

Protein length: 572 aa.
Product: Conserved hypothetical protein

>YALI0F26631g_CDS-001 MEWTKCYAKLSANPDDFEQWKNLLAASHSLGGGLNKGTAESDVQLFRFSYDNFLERFPLA
FGYWIKYAETEFMLGNTEGAETVFERGIGTNQVSVELWAAYARFKIRVCHNVDKMRAFLE
RAVSHVGNHFYAHSIWDVYVEFERREAEIATENKLARLAELLSRIIRIPMHQYAKYFDLL
RDISRQLKPDELGWIKKGKDKSTNNIYVSTQAETARRWAYEQAFPRQYFHVLFVKEEDLQ
AWRRYLDFEESEGNLDRVRMLYERAIIATSHNEEIWLRYIRFMQTVSSSLRVHREEVSTL
FRRACALLPIGRLEVRHLYAIHCESLGELALAHDIYMSILGAFPNSIQTILLFVNFERRY
AYSQFLAQGKSVKKQAAVHQAVQLLMQYLDDENSLRNVEKCEILQLLVDYLQVFPGQAPA
NVRDILSRYEPALKEEYRFWKLAMDYEVERVHKPVKDVSAMSFQDTLTELAAEDESQALA
DEKTKRLSDIVDKALGSLLRLEDKRALLKRFLAYCIDQASNVKDYEKYSAVLYNLGGVQT
TPPAEPLDKPGDAAVSAGAGTSTTTPVAAES*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG