YALI0F23727g

Overview

Description similar to uniprot|P21592 Saccharomyces cerevisiae YPL172c COX10 farnesyl transferase
Locus type CDS
Locus tag YALI0F23727g

Location

Species Yarrowia lipolytica Positions 3113890..3115349
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1460 (nuc.)
Previous locus YALI0F23705g Next locus YALI0F23749g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F23727g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F23727gYALI0F23727g_mRNA-001YALI0F23727g_CDS-001

Nucleotide sequence

 

>YALI0F23727g
ATGCTGCTATCGAACGTAGCGGTCAATCGTACGGTTGTCCACACCCAGCTCGTGTCGGGA
AGCCGGTCCGCTCTTCACGCCCTGTCTCGGACATCACACTCAGTGCCAGTGACACACACC
CATCAACGGAGACACATCTTTTCACACAAACGCCGGCTGTCGTCCTCGACCCTCGCGATC
CCGTTCGCTCTCAGCAACACTAACTCCGCCACAACCGCTCCTCTTCAGTTTCTCTCAAAT
GTGTCTCTTTGTCGAGTTACTCCAGGAACGATCACCACTAGTGCTAAAGCTACCGCCCCC
AATCTCGACAAGATGAGCGCCGAGGCGGCCACAACAGCTGCCCAGGCTTCCGCAAGTCCG
GTGGAAGACTCCTTTCTGAAAAAGGCCGTTTCGTGCCAGTCGGAAACAGAAAGAGAAGCC
GTCATGGCAGCCCGAGCAGCAAAAAAGGCCCTTAGAGAAACCAAAGAAACATGGTGGGCA
CCCTACGTTGCCCTGACTAAACCCCGGCTGACCGTTCTCGTTGTTCTCTCGGCGATGTCG
TCCTACGCACTCACTCCGGAGGCTGTTTCGCTGACTAATCTACTGTTCCTGACGGTGGGA
ACTGCTCTCTGTTCTGGATCTGCCAATGCTATCAACATGGGACGTGAACCCGCTTACGAC
TCGATGATGACTCGAACTCGAGGTCGACCCGTTGTACGTGGTGCAGTCACCCCAAACCAG
GCATTCACCTTTGCTGGCATCACAGGTACCGTGGGAACCGCGGCTCTCTATTTTGGAGTC
AACCCGACAGTGGCCATTCTGGGTGCGTCCAACATTGCGCTCTACGGAGGTCTATACACC
ACCCTCAAGCGAAAACACATTATTAACACGTGGGTGGGAGCTGTGGTTGGAGCTATCCCC
CCTCTCATGGGATGGGCGGCTTCTGGAGGATCTCTTCTGCATCCCGGTGCTTGGTGTCTG
GCTGGACTTTTGTACGCATGGCAGTTTCCACATTTCAACGCCCTGTCGTATAGCATCCGA
GACGAGTATAAAAAGGCCGGCTACGTGATGACTGCATGGAAGAATCCCGGCCTGAACGCC
CGAGTCGGTCTGCGGTACGCACTGCTCATGTTCCCTCTCTGCGTCGGACTCTCCTACTAC
AACGTAACCGACTGGTGGTTTGTTCTAGACTCGTCGGTGCTGAACGCATGGATGGCATGG
TGGGCTTTCAAGTTCTGGCAACAGGAGAACGTCAACATTGCCCTGGCTGCTGCAGGAAAG
CAGTACTCACAAAACCCATTTGCCCGGAAACTGTTCTGGGGCTCAGTCGTGCATCTTCCC
GGTGTGTTGCTGCTGGCCATGATCCATAAGAAGGGCCAGTGGGATTGGTTGTTTGGACCC
TCCGAGGATGAGAAGAAAAAGACTCTCAGCAGCTAATGTAAATATGTATATAGGTCGATA
AGACAGGTTCTGATTAGGGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F23727g_CDS-001

Protein length: 472 aa.
Product: Heme A:farnesyltransferase, putative

>YALI0F23727g_CDS-001 MLLSNVAVNRTVVHTQLVSGSRSALHALSRTSHSVPVTHTHQRRHIFSHKRRLSSSTLAI
PFALSNTNSATTAPLQFLSNVSLCRVTPGTITTSAKATAPNLDKMSAEAATTAAQASASP
VEDSFLKKAVSCQSETEREAVMAARAAKKALRETKETWWAPYVALTKPRLTVLVVLSAMS
SYALTPEAVSLTNLLFLTVGTALCSGSANAINMGREPAYDSMMTRTRGRPVVRGAVTPNQ
AFTFAGITGTVGTAALYFGVNPTVAILGASNIALYGGLYTTLKRKHIINTWVGAVVGAIP
PLMGWAASGGSLLHPGAWCLAGLLYAWQFPHFNALSYSIRDEYKKAGYVMTAWKNPGLNA
RVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWMAWWAFKFWQQENVNIALAAAGK
QYSQNPFARKLFWGSVVHLPGVLLLAMIHKKGQWDWLFGPSEDEKKKTLSS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG