YALI0F22495g

Overview

Description similar to uniprot|O60126 Schizosaccharomyces pombe DNA topoisomerase III
Locus type CDS
Locus tag YALI0F22495g

Location

Species Yarrowia lipolytica Positions 2974004..2975953
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1950 (nuc.)
Previous locus YALI0F22473g Next locus YALI0F22517g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F22495g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F22495gYALI0F22495g_mRNA-001YALI0F22495g_CDS-001

Nucleotide sequence

 

>YALI0F22495g
ATGAAGGTGCTATGTGTGGCGGAAAAACCGAGCGTCGCCAAAGCTGTCTGCAACATCCTC
GGCGGAGGATTTACTACTAGACACACAGCCAACAAGTTTGTTAAAAACTATGACTTTCAG
TATGACTTTCCTGGCTGGGGAAGGTGCGATTGCACCATGACTTCGGTTCTAGGACATCTG
ACAGACTCGGAATTCGTCAGCGAAGATGCGCGGAAGTTTGGTTACAATGCCGCCAGACTC
TTCACTGAGCCCATTACCACCCAGGTGAAGGCTGACATGAGAAAGTGTGCTGACAATATC
GTCAAGGAAGCGCGACACGCACGCAAGCTACTCATTTGGACGGATTGCGATCGAGAAGGA
GAGTACATTGGATGGGAAATCGTGCAGGAGGCGATCAAAGGGAACCCCAACATCGAAGTC
AAGCGGGCCATCTTCTCTGATCTGGAAAAGACCCATGTCCACCAAGCGGCTCGAAGTCTA
CGGGAATTGGATATGAATGCAGTCAACGCGGTAGCCGCCCGGATGGAGATTGATTACAGA
ACGGGATTTGCGTTCACTCGACTGCAAACCCTGCACATCCAAAGGAAGTTTGCGCAGCTG
AGCAAATCTGTCATTTCATACGGATCATGTCAGTTTCCCACGCTGGGATTCATCGTCGAC
CGGTATCTTGCCCGCGAAAATTTTGTGCCGGAACCTTTTTGGTACATGACGCTGAAATGC
AAGGTAGGAAGGAAGCAGATGGCTCTGACATCGAAGAGAGGACACATATTTGACAGAGCG
TCTGCCGTGGCCCTATACGCCCGTGTCTGTGAGTCAGGAGTCCTTCCGAAAGTAACAAAC
TTGAGTTCAAGACCGACTTCGAAATACCGACCTCTGCCTCTGACAACGGTTGAGCTGCTC
AAGCTCGGATCTAAGTCACTCAAGCTGCCATCTAAGACAGTTCTCAAACTGGCCGAAGAG
CTGTATCAACAGTCGTTCATCTCGTACCCGCGTACAGAAACAGATCAGTTTAGCAACGAC
ATAGATCTCATGCCGTTGCTGGCTAAACAGAAGAACAGTCCAACATGGGGAGATTATGCA
AGTACTCTGGTAGACGGAGATGCATTTAGTCCACCTAGATGGGGTCGTCACAACGATAAA
GCGCATCCCCCAATCCACCCTATCGCTCACTGTGCTAATTTCAAGTCCAACGATCACAAA
AGGGTGTATGAGCTGATTGCTCGACATTTCATGGCATGTTGTTCCAAAGATGCCAAGGGT
CAACAGAGTAATGTGGACGTGGATTGGTATGGCGAGCAGTTCTCAGCCACTGGCCTAGTC
ATTCTCGAAACCAACTTCCTCGACATCTATCCCTATGTCAAGTGGACGGGATCAGGGGAG
CTTCCTGCGGGACTTGAAGTCGGCAAAGAACTACCAATTGTTGAGAGTATGCTGGCAGAG
GGAACTACCACGCCCCCGAGTCTTCTCACTGAACCTGAACTGCTGTCGCTGATGGACATG
AATGGAATTGGTACCGATGCCACTATGGCAGAACATATCAGTACAGTCGTCAACCGTGAA
TACATTCTCCGGTGCAACGCACAGGGCCGTCCAGTACAGGGCCGAGCCAAAGCCGAATAC
TTCACTCCTTCTCCTCTAGGGCAGGCATTGGTGGAGGGCTACGATTCTATTGGTCTGGAT
CGGTCACTCACAAAACCGTTCATTCGTCGAGATCTCGAATCCCAGCTTGGCCAAGTAGCC
AAGGGCGAAGCATCAAAGGACGCAGTGGTAGAGTCAGCTCTGATCGCGTTCAAAGACATG
TTTGATTTGACCAAGACCGAGATTGTGAAACTGGAGAGGGCGATTCGACAGAGAGTTGCG
TAGCACGTAGCACTAGAGGGGATCCTATTTATATATATATATTAATGTCTGTACAATTGC
ATGCATACAATATTAATGACGTCTTTGATA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F22495g_CDS-001

Protein length: 621 aa.
Product: DNA topoisomerase III (EC 5.99.1.2), putative

>YALI0F22495g_CDS-001 MKVLCVAEKPSVAKAVCNILGGGFTTRHTANKFVKNYDFQYDFPGWGRCDCTMTSVLGHL
TDSEFVSEDARKFGYNAARLFTEPITTQVKADMRKCADNIVKEARHARKLLIWTDCDREG
EYIGWEIVQEAIKGNPNIEVKRAIFSDLEKTHVHQAARSLRELDMNAVNAVAARMEIDYR
TGFAFTRLQTLHIQRKFAQLSKSVISYGSCQFPTLGFIVDRYLARENFVPEPFWYMTLKC
KVGRKQMALTSKRGHIFDRASAVALYARVCESGVLPKVTNLSSRPTSKYRPLPLTTVELL
KLGSKSLKLPSKTVLKLAEELYQQSFISYPRTETDQFSNDIDLMPLLAKQKNSPTWGDYA
STLVDGDAFSPPRWGRHNDKAHPPIHPIAHCANFKSNDHKRVYELIARHFMACCSKDAKG
QQSNVDVDWYGEQFSATGLVILETNFLDIYPYVKWTGSGELPAGLEVGKELPIVESMLAE
GTTTPPSLLTEPELLSLMDMNGIGTDATMAEHISTVVNREYILRCNAQGRPVQGRAKAEY
FTPSPLGQALVEGYDSIGLDRSLTKPFIRRDLESQLGQVAKGEASKDAVVESALIAFKDM
FDLTKTEIVKLERAIRQRVA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG