YALI0F21967g

Overview

Description similar to uniprot|P39986 Saccharomyces cerevisiae YEL031w SPF1 P-type ATPase
Locus type CDS
Locus tag YALI0F21967g

Location

Species Yarrowia lipolytica Positions 2908829..2912726
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 3898 (nuc.)
Previous locus YALI0F21945g Next locus YALI0F21989g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F21967g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F21967gYALI0F21967g_mRNA-001YALI0F21967g_CDS-001

Nucleotide sequence

 

>YALI0F21967g
ATGTGAGTATGCTCGTTTGCCGATATTGCGGAAGGAAAGCCGACTATACAACCACTTGAA
TTGGACAATGTGGGTTGTTTTAAGGTGTTTACTACCCACCACCTCGAAGCGCCACTTTCA
TAGACATGTTTGTGTCACATCTCCAACAATACTAACCCAGGACACTGGTTTCGTCACCTT
CTATCGCCAGTGCCAGTCTGCACCGGGAGCTCTCCTCCCTGGTGAAACTGTACATCTGGC
CTTTTGTGATTTTGTACCCCATCTTCACCTACGCCTATGTGCTGAAATACGACACCTGGA
TCACCGGCCAGGAATGGACATTTCTGTTTCTGGGTTCCATCATGACCACCCACGCTCTGA
CGTGGCTGGGAACCCACTGGAACGTCAACTTCAAGAGCGCTGTTGAATCGCGGCTCGTCT
CCGACATCAAGGACGCCGATCTCATCAAGCTGTTCCCTGCCCCCAACTGTGGCGCTGCCG
CCATGGTGCCCATTGTTCGAAAGGTATACGAATCCGACTCCACTACTGAGATCTCGTTTG
TGTTCCAGAAGCGACGATACATTTGGAACCCTGAAACCAAGTCGTTTGCGCCTCCCCATT
TCACCATTGACGACGACAACGTGACTGTGGGCGAGTTCCAGACCCCTAAGCCCGTCCGAT
CGGACGACCTGGAACTGGCCTACCGAGTCTATGGCCCCAACAAGTTCGATATCCCCGTTC
CCACCTTTTCCGAGCTTTTCTACCAGCACGCCGTTGCTCCCTTCTTTGTGTTCCAGATCT
TCTGTGTTGCTCTGTGGTGTCTCGACGAAAAGTGGTACTACTCTATCTTCACCCTCATCA
TGCTCGTTATGTTCGAGTCTACCGTTGTGTGGCAACGACAGCGAACCATGACCGAGTTCC
GAGGTATGGGCCTTGCCCCTTACCCCGTTCAGGTCTACCGAGATAACGCCTGGTCCGAGA
TTCAGAGCGATCAGCTTCTGCCTGGTGACATTGTTTCCGTTACTCGATCTGGTGAGGACT
CCGGTCTCGCTTGCGATATGGTTCTGATCGCCGGTACCTGTATTGTCAACGAGGCGATGC
TGTCTGGTGAGTCTACTCCTCTTCTCAAGGAATCCATCCAGCTGCGTGAATCAGCTGCCA
CCCTCGACATGGAGGGCGAAGACAAGAACTCGATTCTGTCCGGTGGAACCAAGGCTTTGC
AGGTTACTCCCCCTGAGACTAACGTGCACAGCGATATTCCTCCTCCTCCCGACGCTGGAT
GTGTTGCTGTTGTCACCAAGACCGGTTTCGAGACTGCCCAGGGCACTCTTGTTCGGGTCA
TGATTTTTGCTACAGAGCATGTTGGTGTCGGTAACGCAGAGGCCCTCTTCTTCATTCTTT
TCCTGCTCCAGTTCGCCATTGCCGCCTCCTACTACGTGTGGACCGAGGGTGTTCGAATCG
ACCGAAACCGATCTAAGCTTCTGCTGGATTGTGTGCTCATTGTCACCTCTGTTGTTCCCC
CGGAGCTCCCCATGGAACTGTCCATGGCTGTCAACTCTTCCCTAGCTGCTCTGTCCAAGT
TCTACATTTACTGTACTGAGCCCTTCCGAATTCCCTTTGCTGGACGTCTTGATATCTGTT
GCTTCGACAAGACAGGTACTCTGACAGAGGAAGATCTTTTGGTCGAGGGTATCACTGGTC
TTGGTTCCGAGAACGACTTCATGAGCATTCTAACTGCCGCCTCTGGAGCTGCTATCCCTG
ACCAGACTGTCCACGTTCTTGCCGCTGCCCATGCTCTCGTCCTTCTCGACGAGGGTGATG
TTGTTGGAGACCCTATGGAGAAGAACACTCTGGCCTCTATCCAGTGGACGGTTGGTGCTC
ATGACGTCATTTCTGCCCCCTCAAAGAAGGAGCAGGTGACTGTTCGGCGACGATTCCAGT
TCTCTTCTGCCCTCAAGCGATCTTCTTCCATTGCATCCCACTCTTCGGGCCGAATGTATG
TCGCCACCAAGGGTGCCCCCGAGACTATCAAGAAGATGCTGGTTTCTGTCCCTAAGGGCT
ACGACGAGACTTACAAGCACTACACTCGAGCCGGTAAGCGAGTTCTTGCCCTCGCTTCCA
AGGATGTCAAGCTGAGCAAGGATGAGCTCATCCACATTGACCGAGAGCATGTTGAATCCG
ACCTTGTCTTTGCTGGTTTCCTTGTCTTCTCCTGTCCCATCAAGCCTGATGCCAAGGAGA
CCATCAAGATGCTGAACGAGTCTTCTCACCGATGTGTTATGATCACCGGAGATAACCCTC
TCACAGGTGTCCATGTTGCCAAGGAGGTTGGAATTCTGTACCCTGGCCGAAAGACCTACA
TCCTGGACTTGTTCAATGGCAAGCTTGCTTTCCGAACTGTCGATGAGGTTGAGGTTGACT
ACGCTGATCCTGCCAAGCCCCTTGATTCCAAGTACCTTGATGGTACCCATGATGTCTGTG
TTACTGGATCTGCTATTTCTTCTCTCACCTTTTCTCACCCTTCCATCGGTGATATCATTC
GACACGCCTGGGTTTACGCTCGAGTTTCTCCTTCCCAGAAGGAGACTCTTGTGTCCCACA
TGAAGGATCTTGGATACATGACTCTCATGTGCGGTGACGGCACTAACGATGTTGGAGCTC
TTAAGCAGGCTCACGTTGGTGTTGCACTTTTGAACGGTACTGTTGACGGTATGAAGAAAA
TGGCCGACAATGCTCGAATTACTACTCTCCAGAATGTTTACAATAAGCAGTGCGAGATGA
TGCGAAAGTGGGGCCAGAAGGATCCTCCTATTCCTATGGCCATTGCTCACTTGTACCCTC
CCGGTCCTCTCAACGTCCACTACGTCAAGGCTATGGAGGCTCGAGGTGTTGAGCTCGATG
AGAAGACCAAGGCTCAGGTTGCCATTCTTTCTGCTCAGCCTGTTGTTGCTGGACAGCCTC
AATCCACTGCTGCTGCAACCCAGGCCTCTGCCCTTGCTGATAAGCTTGTTGGAATGTCTT
CCGAGGATATGGACGAAGCTCCCACTCTCAAGCTGGGAGATGCCTCTGTTGCTGCCCCCT
TCACCTCCAAGCTCGCTAACGTTTCTGCTGTCACGCACATTGTTCGACAGGGTCGATGTG
CTCTGGTCACCACTATCCAGATGTATAAGATTCTTGCTCTGAACTGTCTGATTTCCGCTT
ACACTCTTTCCATTCTGTTCTTTGCCGGCTGTAAGACTTCCGACTCCCAGGCCACCGTCT
GTGGTCTGCTGCTATCTGTCTGCTTCATCTCCATCTCTCGAGGTAAGCCCATCGAGAAGC
TGTCTAGAGAGCGACCTCAGCCCGGAATCTTCAACATTTACATCATGGGGTCCATTCTCG
GTCAGTTTGCCGTCCACATTGTCGCACTGATCTACATCCGAACCGAGGTGTACAAGATTG
AGCCTAGAGAGAACCTGACGGATCTTGACCGAAAGTTTGAGCCCTCCATTCTCAACACAG
CCATGTATCTGTTGCAGCTGGCTTCTCAACTGTCTACCATTGCTGTCAACTACCAGGGCC
GACCTTTCCGAGAGAGCATTCGAGAGAACCGACCTCTGTACTTCGGTCTTCTAGGAGTTG
GTGCATTTGCTTTTGCCTGTTCTACCGAGTTCATGCCCGAGATCAACGAGCAGCTGCAGC
TGGTGCACATGCCCGATGTGTTCAAGGTGCAGCTCACCACCACCATGGCTCTTGACCTGG
GAGTGTGTTGGTTGATTGAGCTTGTGCTCAAGCACTTCTTCTCGGATTACAAGCCTAGCG
ATGTTGCCCAGCGACACGCTACCGAGATTGACGATGATGTTCGGGAGCCCCTGCCCCTGG
AGGAAAAGAAAAACCAGTAGAGAGTTTAGAATAATGAATTAGATGTATTTTACAGATA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F21967g_CDS-001

Protein length: 1234 aa.
Product: P-type ATPase, ion transporter of the ER membrane, putative

>YALI0F21967g_CDS-001 MTLVSSPSIASASLHRELSSLVKLYIWPFVILYPIFTYAYVLKYDTWITGQEWTFLFLGS
IMTTHALTWLGTHWNVNFKSAVESRLVSDIKDADLIKLFPAPNCGAAAMVPIVRKVYESD
STTEISFVFQKRRYIWNPETKSFAPPHFTIDDDNVTVGEFQTPKPVRSDDLELAYRVYGP
NKFDIPVPTFSELFYQHAVAPFFVFQIFCVALWCLDEKWYYSIFTLIMLVMFESTVVWQR
QRTMTEFRGMGLAPYPVQVYRDNAWSEIQSDQLLPGDIVSVTRSGEDSGLACDMVLIAGT
CIVNEAMLSGESTPLLKESIQLRESAATLDMEGEDKNSILSGGTKALQVTPPETNVHSDI
PPPPDAGCVAVVTKTGFETAQGTLVRVMIFATEHVGVGNAEALFFILFLLQFAIAASYYV
WTEGVRIDRNRSKLLLDCVLIVTSVVPPELPMELSMAVNSSLAALSKFYIYCTEPFRIPF
AGRLDICCFDKTGTLTEEDLLVEGITGLGSENDFMSILTAASGAAIPDQTVHVLAAAHAL
VLLDEGDVVGDPMEKNTLASIQWTVGAHDVISAPSKKEQVTVRRRFQFSSALKRSSSIAS
HSSGRMYVATKGAPETIKKMLVSVPKGYDETYKHYTRAGKRVLALASKDVKLSKDELIHI
DREHVESDLVFAGFLVFSCPIKPDAKETIKMLNESSHRCVMITGDNPLTGVHVAKEVGIL
YPGRKTYILDLFNGKLAFRTVDEVEVDYADPAKPLDSKYLDGTHDVCVTGSAISSLTFSH
PSIGDIIRHAWVYARVSPSQKETLVSHMKDLGYMTLMCGDGTNDVGALKQAHVGVALLNG
TVDGMKKMADNARITTLQNVYNKQCEMMRKWGQKDPPIPMAIAHLYPPGPLNVHYVKAME
ARGVELDEKTKAQVAILSAQPVVAGQPQSTAAATQASALADKLVGMSSEDMDEAPTLKLG
DASVAAPFTSKLANVSAVTHIVRQGRCALVTTIQMYKILALNCLISAYTLSILFFAGCKT
SDSQATVCGLLLSVCFISISRGKPIEKLSRERPQPGIFNIYIMGSILGQFAVHIVALIYI
RTEVYKIEPRENLTDLDRKFEPSILNTAMYLLQLASQLSTIAVNYQGRPFRESIRENRPL
YFGLLGVGAFAFACSTEFMPEINEQLQLVHMPDVFKVQLTTTMALDLGVCWLIELVLKHF
FSDYKPSDVAQRHATEIDDDVREPLPLEEKKNQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG