YALI0F19272g - VPS23

Overview

Description uniprot|Q6C148 Yarrowia lipolytica YALI0F19272g VPS23 Component of the ESCRT-I complex
Locus type CDS
Gene name VPS23
Locus tag YALI0F19272g

Location

Species Yarrowia lipolytica Positions 2572779..2574402
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1624 (nuc.)
Previous locus YALI0F19261g Next locus YALI0F19294r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F19272g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F19272gYALI0F19272g_mRNA-001YALI0F19272g_CDS-001

Nucleotide sequence

 

>YALI0F19272g
ATGGCGCTTCCGCCGGCGCTCACCCAGTGGTTACGGAACGTGCTTCTTCCGGTGAGTATC
TTACGACAGCTCCTAATGCCCCCTTCAACGCGCAAGATCAATTGTTTTCTAACAGCAGGA
ATACCCCCATTTGGACCGCACATACAACGACACTCTTGACGCTCTCACACGCTACCCGAC
ACTTCGGCCTCGAACCAGTGTTTACAGTAAGTATCTTGAGGATTTGGACAGTACTGATTG
GGGATAAACAACTAACCCAGCCGATGAGTATGGCAAACCAGCACTACTGTTATGTTTGCA
TGGAACAGTGCCTTCAGTGATTGCTGGAGACACATACAAGATCCCCGTGGAGGTCTGGGT
GCCACATCGGTATCCCGACGAAGGACCTTTTGCATACGTCAGACCGACCAGCACCATGAT
GCTGAGCCCGGGAAACTACGTGGACAACAACGGACGGTGCTATCACCCCTACATCAGCGA
ATGGGGTTCGGATCCCCAGAATACGAACCTGGCTACCTTCCTGAGGGTGCTGTCAGACAT
TTTCAGTAAGGAACCTCCTGTTTACAGTCGTCCTACACCTGAATACGGACCTCCACCTAC
CTATCCCTCTCAGAACGACCAGCAACAGACACACCAGATGCAGCGTCCTCCGCCTTTGGC
CCCACAATCGGGTATGCCAATCCAGCCTGTTCAAACTGGCCAGCATGCTGTGCCACCTGT
GACCAACCACACAGGTCAACATATTCAGCAACAGCCCATGCGTACGGGTCCTGTAGATCT
GGGTGGCTCTTCGACTCATGCTTCCGAAGCAGTGCCTCCCCTTCCGCCCAAGCCACCGCA
GCAATGGAACCAGGGCGCCGTACCTCAGCCACCGGCCCAGTATGCTCAGTATGCTCAGCA
TGCTCAGCACCCTCTCCAGGCCAGCCACCACCCTCAGGCACGCGGCGGTCCTCTTTCTCA
GCAGTTCACTCCTCACCACAGATCCCGTGCTTCCCGCACAGATATCATGGACATGGACAC
CGCAAAGTCTTCTGACGAACCGGCTCCACCTAAACCCCCTAACCCTGAGCGAATGAAGGC
CTTAGATGACCTACACTCTCAGCTGAAGAAAGAAGCGGATGCCATCCAGGCAAACGTGCA
AGCAGATGATGCCCAGATTGAAGGTCTCTGGATGAAACTCAGCTCTCTGGAAGCAGGCGT
GTCTTCGGAAGTACTGCTGCTCAGACAACTGGAAGCGCAGGCAGACAAAAACAACAAGAT
CCTGTCAGACAAAATGGACCAGGCTCGTCGAGTCATTACACAGGCCAGAGCCTGCGAGAT
CCCAGATATCGACTCGGCTGTTTGTGCAGAGAATGTGGTCTTCAACCAACTGTACGATCT
GACTGCCCAGGAACAAGCCATTGACGACACTATTTATGCTCTCAGTCTTGCTCTTGACCG
AGAAAAGATCACCGTTGAGCCGTTCATGAAGCATGTTAGAAACCTGGCCCGCGAGAAGTT
CATCAAGGTTGCCACGATTGATAAAATCGCCGTTGGCGCTGGCCTCAAGTAGATCTGCAT
CCACTAGATAACGAAAGGTAATGACTTATGTATAGTGTACTAATTGTACTAGATGAGTTT
TGGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F19272g_CDS-001

Protein length: 477 aa.
Product: Component of the ESCRT-I complex
Gene: VPS23

>YALI0F19272g_CDS-001 MALPPALTQWLRNVLLPEYPHLDRTYNDTLDALTRYPTLRPRTSVYTDEYGKPALLLCLH
GTVPSVIAGDTYKIPVEVWVPHRYPDEGPFAYVRPTSTMMLSPGNYVDNNGRCYHPYISE
WGSDPQNTNLATFLRVLSDIFSKEPPVYSRPTPEYGPPPTYPSQNDQQQTHQMQRPPPLA
PQSGMPIQPVQTGQHAVPPVTNHTGQHIQQQPMRTGPVDLGGSSTHASEAVPPLPPKPPQ
QWNQGAVPQPPAQYAQYAQHAQHPLQASHHPQARGGPLSQQFTPHHRSRASRTDIMDMDT
AKSSDEPAPPKPPNPERMKALDDLHSQLKKEADAIQANVQADDAQIEGLWMKLSSLEAGV
SSEVLLLRQLEAQADKNNKILSDKMDQARRVITQARACEIPDIDSAVCAENVVFNQLYDL
TAQEQAIDDTIYALSLALDREKITVEPFMKHVRNLAREKFIKVATIDKIAVGAGLK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG