YALI0F19074g

Overview

Description similar to uniprot|P41810 Saccharomyces cerevisiae YDR238c SEC26 coatomer complex beta chain of secretory pathway vesicles
Locus type CDS
Locus tag YALI0F19074g

Location

Species Yarrowia lipolytica Positions 2551306..2554325
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 3020 (nuc.)
Previous locus YALI0F19052g Next locus YALI0F19096g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F19074g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F19074gYALI0F19074g_mRNA-001YALI0F19074g_CDS-001

Nucleotide sequence

 

>YALI0F19074g
ATGTCTGATTCAGCTCAGTACACGTTGGTCTACGAGGTGAGTAAAGCCGCCCGAGGTGTT
TTGTGGCCCCCACAAGTCTCTTCTCGACGTGTCTTTCAAAAATTACACGCCCCCAACACC
TCACAAGACACCACTAACACAGCCCTCGACTGAGAAGCTCTCGGTCCGAGACTTCCAGAA
CCTGCTTGAGAAGGGACGGGATGAAGACAAGGTCGATGCCATGCGGCAAATCCTGGTCGC
CATGCTCAACGGCGACCCCATGCCCCAGCTTCTGATGCAAATCATCCGATTCGTCATGCC
CTCGAAGAACAAGCAGCTCAAGAAGCTGCTGCACTTTTACTGGGAGATCTGCCCCAAGCT
CCAGCCCGATGGAAAGCTCAAACAGGAGATGATTCTCGTGTGTAACGCCATCCGAAACGA
CCTGCAGCACCCTAACGAGTACATTCGAGGAGAGACCCTGCGATTCCTGTGCAAGCTCAA
GGAGCCCGAGCTGCTGGAGTCTTTGATTCCCTCTGTGCGGTCCAACATGGAGCACCGACA
CTCCTACGTGCGAAAGAACGCCGTTTTCGCCATCGCCTCCATTCGAGAGATCTCCGAGAC
CCTTGTCCCCGACTGCGACGAGCTGATCTCCACCTTCCTGGACGCTGAGACCGACGCCAC
ATGTAAGCGAAACGCGTTTGTGTCGCTTGCCAACATCAACCGAGACTGGGCGTTTGCCTA
CCTGCAGAAACAGCTGCCCTCCATCGGTTCCCTCGACGAGCTCATCCAGCTGGCGTTTGT
CCAATTCATTCGACGAGACGCCATTGTCACTCCCGAGCTGAAGCAGTCCTACATTGCCAT
CGTACTTGAGATGCTCGAGGCCTCGTCTCCCGCCGTCACTTACGAGGCTGCCATGGCCCT
GACTGCCCTCACCTCTAACCCCACTGCTCTGCGAGCTGCCGCCCAGGAGCTGGTGGATCT
CGCCATCCACGAGTCTGACAACAACGTCAAGCTCATTGTTCTGGACCGAGTTGATACCCT
GCATCGACGAAACCCAGGAATTCTCAACGAGCTGTCCATGTCCATTCTGCTGATTCTGTC
GTCTGCCGATCTGGATGTGCGATCCAAGGCCATCGACATTGCCCTAGACATGGTGTCCTC
TACAAACATTGACGAGGTTATTAAGCTCTTCAAGAAGGAGCTCCAGGCCACCGTCTCCCA
GGAGTACGAGCGAAACGCCGAGTACAGACAGGTTCTTATCCGAGCCATCCACAACTGCTC
CATCAAGTTCCCCCAGGTGGCTGCCCAGGTTGCTGATCTGCTGCTAGACTTTGTGGCCGA
CTTCAACTCCTCTTCTGCCAACGATGTCATCATCTTTGTACGAGAGGTTGTCGAGCGGTT
CCCCAACCTACGATCTACTATCGTCCGACGACTGTTGACCACTCTGTCTTCTGTTCGACG
AGCCACTGTCTACCGATCTGCTCTCTGGGTCATTGGAGAGTACTGTCTCGAGGAAGCAGA
CATCCAGGAGGCATGGCAGCACATTCGAAATTCTCTTGGAGAGGTTCCCATTGTTGCTTC
TGAGCGACGAAAGAGAGACGGTGAGACCAATGGTGCCGAGGAGGAGCCCGATGTTGGCGA
GACTGCCACCCACAAGCCTTCCCGAAAGGTTCTTGCTGACGGTACTTACGCCACCGAATC
TGCCCTGACCACCACTGTCAAGGCCGAGGTTGACGAGTTTGAGGGCCAACCTCTGCGGTC
TATCATCCTCAAGGATGGCAACTACTTTGTTGCCGGCGTTCTTGGATCCACTCTCGCCAA
GTTGGTGTTCCGATACGCTGCCATCACCAAAAAGCCTGCTCGGGTCAACGCTCTCAAGGC
CGAGGCCATGCTGTTCCTGACCTCTATTCTGCGAGCTGGCCAGTCCGAGTTTTCTGCTGT
TTCTATCGACGAGGACTCTACTGACAGAATCCTGTCTTGTATTCGAGCGATCTCTCAGGG
CGACCGAGAGCCTGCCGTTGTGGAGGCCTACAGAGAAGACACGAAGGAGGCCTTCCGAGC
CCTTGTTGGCAAGCTCGATAAGGAGCGTGCCGACAAGAAGGCTGCTGACAAGCGAAACAA
CGCCGTTCAAGTCGATGACTCCCTATCTTTTCGACAGCTTGTCAAGACTGATGGTGACGA
CGAGGAGCCCGAGGCTCTTGATACTATCGACACCACTGTTGTTTCTACCAAGCCTCTTTC
CTCTCTTGCCAAGGTCCAGCCCCTCACTGGATTCTCCGACCCTATCTACGCTGAGGCCGT
CATCAACGTGCACCAGTTTGACATCATTCTCGACATTCTGCTTGTTAACCAGACCAAGGA
CACCCTCCGGAACCTCACAGTGGAGTTCTCTGTGCTTGGTGACCTCAAGGTTGTTGACCA
GCCTCAGAGTCTCAACCTCGGTCCCCATGGATTTGCCTCTCTACAGACCACCATCAAGGT
GTCTTCTGCTGATGCGTCTGTCATTTTCGGTAACATTGTCTACGACGGTCAGTCTTCTCT
GGACAACAAGGTTGTTATTCTCAACGATCTGCATGTTGATATTATGGACTACATCAAGCC
TTCCACCTGCTCCGAGACTGAGTTCCGAAGCATGTGGAGCGAGTTTGAATGGGAGAACAA
GGTCAACCTCATGGCAAAGGGTCTTACTCTTCAGAAGTACATTCGGTACTTTGTTGAGAA
CACTAACATGAAGTGTCTCACTCCTGGTGCCATCAAGGAGGATGCTACTGATCTTGAGGA
CGACTGCGGCTTCCTTTCTGCTAACCTGTACTCTATCAGTTCGTTTGGTGAGGAGGCTCT
TGCAAACATCTCGATTGAGATCAACGACAACCTGGAGATTTCTGGACACGTCCGAATTCG
GTCCAAGGGTCAGGGTCTGGCTCTGTCGCTGGGTGATCGGGTTGCCGACATTCAGAAGCA
GCTCGTGTTGAAGAGCCTGGCATAAGGTGAGCTTGTATATATATATAGAACAAGCAATGT
AATGAAAATTGTACTATCTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F19074g_CDS-001

Protein length: 953 aa.
Product: Essential beta-coat protein of the COPI coatomer, putative

>YALI0F19074g_CDS-001 MSDSAQYTLVYEPSTEKLSVRDFQNLLEKGRDEDKVDAMRQILVAMLNGDPMPQLLMQII
RFVMPSKNKQLKKLLHFYWEICPKLQPDGKLKQEMILVCNAIRNDLQHPNEYIRGETLRF
LCKLKEPELLESLIPSVRSNMEHRHSYVRKNAVFAIASIREISETLVPDCDELISTFLDA
ETDATCKRNAFVSLANINRDWAFAYLQKQLPSIGSLDELIQLAFVQFIRRDAIVTPELKQ
SYIAIVLEMLEASSPAVTYEAAMALTALTSNPTALRAAAQELVDLAIHESDNNVKLIVLD
RVDTLHRRNPGILNELSMSILLILSSADLDVRSKAIDIALDMVSSTNIDEVIKLFKKELQ
ATVSQEYERNAEYRQVLIRAIHNCSIKFPQVAAQVADLLLDFVADFNSSSANDVIIFVRE
VVERFPNLRSTIVRRLLTTLSSVRRATVYRSALWVIGEYCLEEADIQEAWQHIRNSLGEV
PIVASERRKRDGETNGAEEEPDVGETATHKPSRKVLADGTYATESALTTTVKAEVDEFEG
QPLRSIILKDGNYFVAGVLGSTLAKLVFRYAAITKKPARVNALKAEAMLFLTSILRAGQS
EFSAVSIDEDSTDRILSCIRAISQGDREPAVVEAYREDTKEAFRALVGKLDKERADKKAA
DKRNNAVQVDDSLSFRQLVKTDGDDEEPEALDTIDTTVVSTKPLSSLAKVQPLTGFSDPI
YAEAVINVHQFDIILDILLVNQTKDTLRNLTVEFSVLGDLKVVDQPQSLNLGPHGFASLQ
TTIKVSSADASVIFGNIVYDGQSSLDNKVVILNDLHVDIMDYIKPSTCSETEFRSMWSEF
EWENKVNLMAKGLTLQKYIRYFVENTNMKCLTPGAIKEDATDLEDDCGFLSANLYSISSF
GEEALANISIEINDNLEISGHVRIRSKGQGLALSLGDRVADIQKQLVLKSLA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG