YALI0F18238g

Overview

Description similar to uniprot|P25808 Saccharomyces cerevisiae YFL002c SPB4 ATP-dependent RNA helicase of DEAH box family
Locus type CDS
Locus tag YALI0F18238g

Location

Species Yarrowia lipolytica Positions 2422802..2424713
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1912 (nuc.)
Previous locus YALI0F18216g Next locus YALI0F18249r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F18238g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F18238gYALI0F18238g_mRNA-001YALI0F18238g_CDS-001

Nucleotide sequence

 

>YALI0F18238g
ATGTCTACCGACTGGAAAGACTTGCCCGTTGCGCCATGGCTGATCGACACCATGGAGCAG
TTCGGATTCACCGATATGACCCCTGTCCAAGCTTCAGTCATCCCCATGTTTGCAGGAAAC
AAGGACGTGATTGTCGAGGCAGTCACTGGCTCAGGAAAGACCATTGCCTTCCTAGTTCCT
CTGATCCAGCGAATGCTGAATCTGCTGAAGGAAGGACCGGCTGTTTCTGGCCGAGTGTAC
TCTGTGGTCGTCTCTCCTACCCGGGAACTTGCCCGACAGACATATGAAGTGCTGCAGTCC
ATTCTGGAGATGGGATGTCCTGAAGCCGATGCTAGCGACAAAATCACCCTGGAGAAGAAG
AAGAAGGGAAAGGCCGCCCCCACCATGCCCAAGAAGATCCGAGGCCAGCTGATCATGGGT
GGAGATCTTCCATCTCATATGGATCTGAAGAACTTCCTTAGAGACAAGCCTCAGATCATT
GTTGCCACTCCTGGCCGATTGCTCGAGCTGTTGCGTGCTCCCCAAATCAAGACATCCGCA
TTTGACTCTCTGGTCCTGGACGAGGCCGACCGGCTTCTCGACCTCGGCTTTGGACGAGAC
ATTACATCCATCATCAACATTCTCCCCAAACAGCGAAGAACAGGACTTTTCTCTGCTACA
ATCACAGACGCCATCCAGAACCTGGTCAAAATTGGTCTACGAAATCCCGTCAAGATTGTC
GTCAAGGTTGGCGGTAAGAAGGAACAGAAGACCCCGCTTTCGCTGGGTCTCTCTTACGTT
GTTCTGGAGCCTCGCGAGAAGCTGGCCTACGCTCTCAATCTGCTCAGTATCTACCCCTAC
AGAAAGGCCATTGTTTACTTGCCCACATGTGCAGCTGTGACATACTACCAGCAAATGTTT
TCACATCTCAACGAGGGCAGGGAAGAACCCTATGAGATCTACGGTCTTCATGGAAAACTG
CCATCATCTACTCGAATCAAGATTCTCAACAAGTACCAAAAGACTGGAGCGCAAGCCATC
TTGATGACTACAGATATCGCTGCCAGAGGTCTTGATATTCCCGAGGTTGATCTTGTTGTC
CAGCTTGATCCTCCTTCTGATGCTGACACCTTCCAGCATCGATGTGGACGAGCCGGTCGA
GCTGGAAGACAGGGCCAGGCTATTGTACTTTTGCATAAGGGACGAGAGGAGGAATACGTG
GACCTCATGAGAGTCCGAAAGGTGAAGCTGCGACCATACACCGGACCTGGGTCGGAGCTG
GAAGGAGAGAAACTGGATCAGGAGGCTACGGAACTGTACACCAAGCTGAGAAAGTGGGTG
CTCGAAGACAGACAACGCCATGACCAGGCTCTTCTTTCGTTTGTGTCCTTTGTCCGGTTC
TACTCCAAGCATGTTGCCCAGTCCATTTTCCGAATCCAGTCACTGGATCTGCCTGGGCTG
GCAGCCTCTTACGGCCTGTTGCGCCTGCCTAAGATGCCTGAGCTGCGAACCAAGGACAAC
GAGAGACCTGAAAACACATGGCTGGGCGAGGTGATTGACTTCGACACATACTCGTACAAG
AACCCCGCCAAGGAGGAGGCCCGACTCAAGGAGCTGGAGGCACACAAGGAAGCCATGAAG
AACAAGGTCAAGATCCACAAGACCAAGAACGACGTCCAGAAGGCCAACCGAGCCTGGTCC
TCCACGCTTCAGAAGAAGGAGGAGAAGTCTGAGCGTCACCAGAAGAAGCAGACACGTATC
AACGAGAAAATCAAGCGGGACTTTGAGGAGGCCAAAGATCTCAAGCAGGAGGAGTCCAAG
GAGGTTGTTAACGACTGGAAGGACATGGTCAAGAAGAGCAAGAAGCGCAAGGTCGATCTG
CCTACCTTTGACGACCTGTAAGGTATATAGACAATTATTTATGCTACGTTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F18238g_CDS-001

Protein length: 627 aa.
Product: ATP-dependent RNA helicase, putative

>YALI0F18238g_CDS-001 MSTDWKDLPVAPWLIDTMEQFGFTDMTPVQASVIPMFAGNKDVIVEAVTGSGKTIAFLVP
LIQRMLNLLKEGPAVSGRVYSVVVSPTRELARQTYEVLQSILEMGCPEADASDKITLEKK
KKGKAAPTMPKKIRGQLIMGGDLPSHMDLKNFLRDKPQIIVATPGRLLELLRAPQIKTSA
FDSLVLDEADRLLDLGFGRDITSIINILPKQRRTGLFSATITDAIQNLVKIGLRNPVKIV
VKVGGKKEQKTPLSLGLSYVVLEPREKLAYALNLLSIYPYRKAIVYLPTCAAVTYYQQMF
SHLNEGREEPYEIYGLHGKLPSSTRIKILNKYQKTGAQAILMTTDIAARGLDIPEVDLVV
QLDPPSDADTFQHRCGRAGRAGRQGQAIVLLHKGREEEYVDLMRVRKVKLRPYTGPGSEL
EGEKLDQEATELYTKLRKWVLEDRQRHDQALLSFVSFVRFYSKHVAQSIFRIQSLDLPGL
AASYGLLRLPKMPELRTKDNERPENTWLGEVIDFDTYSYKNPAKEEARLKELEAHKEAMK
NKVKIHKTKNDVQKANRAWSSTLQKKEEKSERHQKKQTRINEKIKRDFEEAKDLKQEESK
EVVNDWKDMVKKSKKRKVDLPTFDDL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG