YALI0F17996g - ABC5lf

Overview

Description uniprot|Q6C1A3 Yarrowia lipolytica YALI0F17996g ABC5sf Plasma membrane ATP-binding cassette (ABC) transporter, putative; uniprot|Q6C1A3 Yarrowia lipolytica YALI0F17996g ABC5lf Plasma membrane ATP-binding cassette (ABC) transporter, putative; uniprot|Q6C1A3 Yarrowia lipolytica YALI0F17996g ABC5sf Plasma membrane ATP-binding cassette (ABC) transporter, putative
Locus type CDS
Gene name ABC5lf
Locus tag YALI0F17996g

Location

Species Yarrowia lipolytica Positions 2393131..2397948
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 4818 (nuc.)
Previous locus YALI0F17974g Next locus YALI0F18018g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F17996g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F17996gYALI0F17996g_mRNA-001YALI0F17996g_CDS-001YALI0F17996g_CDS-002YALI0F17996g_mRNA-002YALI0F17996g_CDS-001

Nucleotide sequence

 

>YALI0F17996g
TGACGAACGTGTCTCGATCAATGTGAGTATACCATGGCGTCTTAGCGGGCCTGGTGCCGC
TGCTATCTGCTGATTTTACTTGAATGGAGAGAGTAGCCCAACCAACCTTGCTGGAAGGGT
TAACCGTTCTAGCCTTGCTGCTTGGAAGAGGTTCCAAAGTCTAGACGGAAAAGGATCCAA
CTTTTTTCTTCCTCACACATATCACCACTCCAAGCACCATGGACAACGGCCCTATCGATC
CCAATCGGGACGTGGAGCAAGAACACCCGGTGCAAGTCGACCACACCGAGAAGCACGAAT
CTTCCTCCTCCGGAGCTCCTCTAACGCAGATGTCGGAAACCTCGGAAGATAACACTTACA
CGGCGACCCCGGTGCCTCTCACCGATGTCGAGAACATGGACCCCGATTCCCGGGACGTGA
ACGATCTGCAGCGGGTGCTGTCCAACCCCGAGTCGCTGCACAAGCTGCAGTCATACACAG
AGCAGATTTCTCGTCGAATGACCCAAGATGAGCGAGAGTCTCTCAAGAACAACGAAGACA
CCTTTGACCTGGCCCGAATTCTCGACGGCTTTGTGCAAAAGTCCCACGAGCAAGGCGTGC
ACATGCGTTCTGCAGGCGTGGGCTGGAGAAACCTGACCACCGACGGTATCGACCAGTCCA
CCGTCTTTGTTCCTTCGGTCGACGAGCTGCTGCGAGCCCTGGCCACCCTGCCAGTCCAAA
TCGCTAAGGCTTTCAAGAAGAAGCAGACTCGACACATTATCCAGAACAACAACGGAGTGC
TCAAGGCCGGAGAGATGTGCCTGGTGCTCGGCCGACCTGGATCTGGATGCTCCACCTTCC
TCAAGACCATTACCGGACAGGTCGGAGGCTACACTGGCGTGGAGGGAGACATTTCATACG
ACGGTCTCAGCCAGAAGGACATGCTGGAGTACTTTAAGTCGGACATTATCTACAATGGAG
AGCTGGACGTGCATTTCCCCCATCTCACCGTCGAAGAGACTCTTAACTTTGCTGTCGGAT
GCCGAACCCCACGACAGCGTCTGGACGGACTCACTCGAGACCAGTACATCAAAAACTACG
TCCAGCTGCTGGCAACCGTCTTCGGTCTGCGTCACACCTACAACACCAAGGTTGGAAACG
ATTTCGTTCGAGGTGTGTCTGGAGGAGAGCGAAAGCGAGTCTCTATTGCAGAGGCCCTGG
CTACCCGAGCTTCCATTTTTGCTTGGGATAACGCTACTCGAGGTCTCGATGCCTCCACTG
CTCTGGAATACTCTCAGGCCATCCGAGCCACCACTAACATTCTCAACAATGCGTCGTTTG
TTGCCATCTACCAGGCCGGAGAGCACATCTACAACCTCTTTGACAAGGTCACTGTGCTCT
ACTCTGGTCGACAGATTTACTACGGACCCGCCGATCACGCCAAGGACTACTTCCAGCGAA
TGGGTTACGAGTGCCCTCCTCGACAGACTACCGCCGAGTTCCTCACAGCTGTTACCGACC
CCCTTGGCCGAGAGCCCTACCCTGAGATGGTCGGCAAGGTGCCCACCACCGCTGACGAGT
TCGAGAAGTACTGGCTGGCCTCCCCCGAGTTCCGAGTGGTCCAAGCCGAGTACGACGACT
ATGTGGGTTCCCATAACGCCGAGGAGACATTCCAGAACATGCAGGACTCGCTGTCCAAGG
ATAAGATGAAGCGACAGCGAAAGAAGTCGCCCTACCTCATCTCCTTTGCCATGCAGATGC
GACTCCTCACCCAGCGAGGTTTCGAGCGTCTCAAGGGAGACATGGCCTACCAGACCATCA
ACGTGTGTGCCAACATCATCCAGGCCCTCGTCATTGGTTCGCTTTTCTACAACATTACTG
AGTCCACCGCTGGAGCATTCTCTCGAGGTGGTGTTCTTTTCTTTACTCTTCTGTTTAATG
CTCTCGCCTCTATGGCCGAGATTTCCCACTCCTTCTCCCAGCGACCTATTATTGTGAAGC
AAAAAAGTTACTCGTTCTACCACCCTGCCGGCGAGGCCCTCCAGGCCCTGCTGACCGATA
TCCCCGGTAAGCTTGTTACCATGATCTGTTTCACCCTCATTGTTTATTTCTTGACCCACC
TGAACCGAACGGCCGGCCAGTTCTTTGCCCATCTGTTCATTTTGTTCGTCACAACCCAGT
GTATGACGGCCTTTTTCCAAGTGCTGGCCTCTGCCACTCCTTCCGTTGAAGTTGCCAATT
CGCTGGCTGGTATTGGTATTCTGATTATCGTCGTCTACTCTGGTTATATGATCCCCACCC
CTACCATGCATGTGTGGTTCAAGTGGCTGAACCGAGCCAACCCTGTGGCTTACGGTTTCG
AGGCCCTGATGGCCAACGAGTTTCACAACCGAGTCATGACCTGTGAGCAGATTGTGCCCG
CTGGTCCAGACTACTCCGGCATGCCCGAATCCAACAAGGTCTGCTCCTTCTCTGGTTCCA
CACCCGGTTCTCTGGTCGTCACTGGTGACAACTACATCAAGAACTCGTACAACTACTCTT
TCTCGCACATGTGGAGAAACCTGGGTATTCTGTTTGCTTTCTGGATGGGCTTCGTTTTCT
TCAACGTCACCTTCTCCGAGTACATCCAATACCACTCCTCTTCTGGTGACGTTCTGCTGT
TTAAGCGAGGCCATATTCCCGAGGAGCTGCAGAAGGAGGGTGCTGATATTGACGAGGTGA
TTGCTGACAAGGCCCAGGCTGACGATTCCGAGAAGAAGATGGACCGCCTCCTCTCCCTCG
ATGAAGAGCGAGACGTCTTCACCTGGCAAAATGTCGACTATGTCATTCCTATTGCTGGCG
GTACTCGAAAGCTGCTAGATAACGTGCAGGGTTACGTCAAGCCCGGTACTATCACTGCTC
TTATGGGAGAGTCTGGTGCTGGTAAGACCACTCTACTCAACGTTCTGTCTCAGCGAATCA
ACTTTGGTGTCATCACTGGTGACATGCTTGTCAACGGCCGACCTCTGGATCGAACTTTCC
AGCGACGAACCGGTTATGTCCAGCAGCAGGATCTGCATCTTGCTGAGTCCACTGTTCGTG
AATCTCTGATTTTCTCTGCCCGTCTTCGACAGCCCTCTTTTGTCCCCGACCAGGAGAAGA
TTGACTACTGTGACAAGATCATCAAGCTGCTTGGTATGGAAGCTTACGCAGAGTCTCTTG
TTGGAGAGACTGGTCGAGGTCTCAACGTGGAGCAACGAAAGAAGCTGTCTATCGGTGTCG
AGCTTGTCGCCAAGCCTTCTTTGCTGCTGTTCTTGGATGAGCCTACTTCTGGTCTTGACT
CTCAGTCTGCTTGGGCTATTGTCCAGTTCCTCAAGAACCTTGCTGCTGCCGGCCAGGCCA
TTCTGTGTACCATCCATCAGCCTTCTGCTACTCTGTTTGAGGAGTTTGACCGTCTTCTGC
TTCTGAAGAAGGGTGGCCAGACCGTCTACTTCGGTGATATTGGTAAGAACTCCAACACCC
TCGTCTCTTACTTTGAGCGACAGGGTGGTCGAAAGTGTGCTCCCGATGAGAACCCTGCCG
AATACATTCTCGAGTGTATCGGTGCCGGTGCTACTGCTACTGCCGATGGAGACTGGCACG
ATAAGTGGAAGAACTCTGAGGAGTACCGACAGACCACCGATGAGATTGCCAAGCTCCAAC
AGGAGCTTGCTCAGCGACCCCAGAAGGAACTGGACCCCTCTCTTCAGCGAAAGTACGCTG
CTCCTTACATGACTCAGCTGCGATGGGTTCTTCGACGAACCCAGATTCAGTTCTGGCGGT
CTCCCGGCTACATTATGGCCAAGTTCATGCTTCTTATCGTTGGTGGTCTCTTCATTGGTT
TCTCTTTTTGGGACATCAAGTTCACCCTGTCTGGAATGCAGAATGCCATTTTCGCTGTCT
TCATGATCACCACTCTGTCTGTGCCTCTTATCAACCAGATCCAGTCGTTTGCCTTCCAGT
CCCGAGAGTTGTTTGAGGTTCGAGAGTCGTCGTCCAACACCTTCCACTGGTCTTGTCTGC
TCTTCTCTCAGTTCATTTCTGAGCTGCCTTACGCTCTGATTGGTGGAACCATCTTTTACT
GCTGTGTCTACTTCCCCACCAAGCTAGGTACTTCTGCTCGAGTGGCCGGATACTTCTACT
TCATCTACGCCATTCTGTTCAACCTGTACTACCTGTCCTTCGGTCTGTGGATTCTCTACT
TTTCGCCTGATGTGCCCTCGGCTTCCATCATTACCTCGCTCATGTTCTCCTTCGTCATTG
CCTTCTGTGGTGTTATGCAACCCGCTTCTCTCATGCCTGGTTTCTGGACCTTCATGTACA
AGCTGTCTCCCTTCACCTACATTATTCAGGCCTATGTTGGAGATGTTATGCATGACCGAA
AGATTACCTGTCTGCCCCGAGAGTTCTCTCGATTCAACCCTCCCAGTGGGCAGACTTGTC
AGGAGTATGCTGGTAAGTTCCTGAGCCAGGCCACCGGCTACCTTGAGGACCCCAACGCCA
CTACCCAGTGTGGTTACTGCCCTTACTCTGTGGCTGACGAGTTCATTGCCACTGTGGGCA
TCAAGTACCACTACCGATGGCGAAACGTTGGTTTCATCTGCGCCTACATCATCTTCAACA
TCTGTGCCATGGTTCTTTGCTACTACCTGGCCCGTGTTCGAGTGTGGCGAACTGGTGCTG
CCATTGCTGACTGGAAGGCTAAGCGAGCCAACAAGAAGAAGGCTGCTTCCAGCGAGAAGG
CCTAGATGGAGGATTTGCGGAGGATTCACACACAAAACTGTTTATTGACACTATAGAATG
ATACATTGAGATTGATTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F17996g_CDS-001

Protein length: 1472 aa.
Product: Plasma membrane ATP-binding cassette (ABC) transporter, putative
Gene: ABC5lf

>YALI0F17996g_CDS-001 MSETSEDNTYTATPVPLTDVENMDPDSRDVNDLQRVLSNPESLHKLQSYTEQISRRMTQD
ERESLKNNEDTFDLARILDGFVQKSHEQGVHMRSAGVGWRNLTTDGIDQSTVFVPSVDEL
LRALATLPVQIAKAFKKKQTRHIIQNNNGVLKAGEMCLVLGRPGSGCSTFLKTITGQVGG
YTGVEGDISYDGLSQKDMLEYFKSDIIYNGELDVHFPHLTVEETLNFAVGCRTPRQRLDG
LTRDQYIKNYVQLLATVFGLRHTYNTKVGNDFVRGVSGGERKRVSIAEALATRASIFAWD
NATRGLDASTALEYSQAIRATTNILNNASFVAIYQAGEHIYNLFDKVTVLYSGRQIYYGP
ADHAKDYFQRMGYECPPRQTTAEFLTAVTDPLGREPYPEMVGKVPTTADEFEKYWLASPE
FRVVQAEYDDYVGSHNAEETFQNMQDSLSKDKMKRQRKKSPYLISFAMQMRLLTQRGFER
LKGDMAYQTINVCANIIQALVIGSLFYNITESTAGAFSRGGVLFFTLLFNALASMAEISH
SFSQRPIIVKQKSYSFYHPAGEALQALLTDIPGKLVTMICFTLIVYFLTHLNRTAGQFFA
HLFILFVTTQCMTAFFQVLASATPSVEVANSLAGIGILIIVVYSGYMIPTPTMHVWFKWL
NRANPVAYGFEALMANEFHNRVMTCEQIVPAGPDYSGMPESNKVCSFSGSTPGSLVVTGD
NYIKNSYNYSFSHMWRNLGILFAFWMGFVFFNVTFSEYIQYHSSSGDVLLFKRGHIPEEL
QKEGADIDEVIADKAQADDSEKKMDRLLSLDEERDVFTWQNVDYVIPIAGGTRKLLDNVQ
GYVKPGTITALMGESGAGKTTLLNVLSQRINFGVITGDMLVNGRPLDRTFQRRTGYVQQQ
DLHLAESTVRESLIFSARLRQPSFVPDQEKIDYCDKIIKLLGMEAYAESLVGETGRGLNV
EQRKKLSIGVELVAKPSLLLFLDEPTSGLDSQSAWAIVQFLKNLAAAGQAILCTIHQPSA
TLFEEFDRLLLLKKGGQTVYFGDIGKNSNTLVSYFERQGGRKCAPDENPAEYILECIGAG
ATATADGDWHDKWKNSEEYRQTTDEIAKLQQELAQRPQKELDPSLQRKYAAPYMTQLRWV
LRRTQIQFWRSPGYIMAKFMLLIVGGLFIGFSFWDIKFTLSGMQNAIFAVFMITTLSVPL
INQIQSFAFQSRELFEVRESSSNTFHWSCLLFSQFISELPYALIGGTIFYCCVYFPTKLG
TSARVAGYFYFIYAILFNLYYLSFGLWILYFSPDVPSASIITSLMFSFVIAFCGVMQPAS
LMPGFWTFMYKLSPFTYIIQAYVGDVMHDRKITCLPREFSRFNPPSGQTCQEYAGKFLSQ
ATGYLEDPNATTQCGYCPYSVADEFIATVGIKYHYRWRNVGFICAYIIFNICAMVLCYYL
ARVRVWRTGAAIADWKAKRANKKKAASSEKA*

YALI0F17996g_CDS-002

Protein length: 1509 aa.
Product: Plasma membrane ATP-binding cassette (ABC) transporter, putative
Gene: ABC5lf

>YALI0F17996g_CDS-002 MDNGPIDPNRDVEQEHPVQVDHTEKHESSSSGAPLTQMSETSEDNTYTATPVPLTDVENM
DPDSRDVNDLQRVLSNPESLHKLQSYTEQISRRMTQDERESLKNNEDTFDLARILDGFVQ
KSHEQGVHMRSAGVGWRNLTTDGIDQSTVFVPSVDELLRALATLPVQIAKAFKKKQTRHI
IQNNNGVLKAGEMCLVLGRPGSGCSTFLKTITGQVGGYTGVEGDISYDGLSQKDMLEYFK
SDIIYNGELDVHFPHLTVEETLNFAVGCRTPRQRLDGLTRDQYIKNYVQLLATVFGLRHT
YNTKVGNDFVRGVSGGERKRVSIAEALATRASIFAWDNATRGLDASTALEYSQAIRATTN
ILNNASFVAIYQAGEHIYNLFDKVTVLYSGRQIYYGPADHAKDYFQRMGYECPPRQTTAE
FLTAVTDPLGREPYPEMVGKVPTTADEFEKYWLASPEFRVVQAEYDDYVGSHNAEETFQN
MQDSLSKDKMKRQRKKSPYLISFAMQMRLLTQRGFERLKGDMAYQTINVCANIIQALVIG
SLFYNITESTAGAFSRGGVLFFTLLFNALASMAEISHSFSQRPIIVKQKSYSFYHPAGEA
LQALLTDIPGKLVTMICFTLIVYFLTHLNRTAGQFFAHLFILFVTTQCMTAFFQVLASAT
PSVEVANSLAGIGILIIVVYSGYMIPTPTMHVWFKWLNRANPVAYGFEALMANEFHNRVM
TCEQIVPAGPDYSGMPESNKVCSFSGSTPGSLVVTGDNYIKNSYNYSFSHMWRNLGILFA
FWMGFVFFNVTFSEYIQYHSSSGDVLLFKRGHIPEELQKEGADIDEVIADKAQADDSEKK
MDRLLSLDEERDVFTWQNVDYVIPIAGGTRKLLDNVQGYVKPGTITALMGESGAGKTTLL
NVLSQRINFGVITGDMLVNGRPLDRTFQRRTGYVQQQDLHLAESTVRESLIFSARLRQPS
FVPDQEKIDYCDKIIKLLGMEAYAESLVGETGRGLNVEQRKKLSIGVELVAKPSLLLFLD
EPTSGLDSQSAWAIVQFLKNLAAAGQAILCTIHQPSATLFEEFDRLLLLKKGGQTVYFGD
IGKNSNTLVSYFERQGGRKCAPDENPAEYILECIGAGATATADGDWHDKWKNSEEYRQTT
DEIAKLQQELAQRPQKELDPSLQRKYAAPYMTQLRWVLRRTQIQFWRSPGYIMAKFMLLI
VGGLFIGFSFWDIKFTLSGMQNAIFAVFMITTLSVPLINQIQSFAFQSRELFEVRESSSN
TFHWSCLLFSQFISELPYALIGGTIFYCCVYFPTKLGTSARVAGYFYFIYAILFNLYYLS
FGLWILYFSPDVPSASIITSLMFSFVIAFCGVMQPASLMPGFWTFMYKLSPFTYIIQAYV
GDVMHDRKITCLPREFSRFNPPSGQTCQEYAGKFLSQATGYLEDPNATTQCGYCPYSVAD
EFIATVGIKYHYRWRNVGFICAYIIFNICAMVLCYYLARVRVWRTGAAIADWKAKRANKK
KAASSEKA*

YALI0F17996g_CDS-001

Protein length: 1472 aa.
Product: Plasma membrane ATP-binding cassette (ABC) transporter, putative
Gene: ABC5lf

>YALI0F17996g_CDS-001 MSETSEDNTYTATPVPLTDVENMDPDSRDVNDLQRVLSNPESLHKLQSYTEQISRRMTQD
ERESLKNNEDTFDLARILDGFVQKSHEQGVHMRSAGVGWRNLTTDGIDQSTVFVPSVDEL
LRALATLPVQIAKAFKKKQTRHIIQNNNGVLKAGEMCLVLGRPGSGCSTFLKTITGQVGG
YTGVEGDISYDGLSQKDMLEYFKSDIIYNGELDVHFPHLTVEETLNFAVGCRTPRQRLDG
LTRDQYIKNYVQLLATVFGLRHTYNTKVGNDFVRGVSGGERKRVSIAEALATRASIFAWD
NATRGLDASTALEYSQAIRATTNILNNASFVAIYQAGEHIYNLFDKVTVLYSGRQIYYGP
ADHAKDYFQRMGYECPPRQTTAEFLTAVTDPLGREPYPEMVGKVPTTADEFEKYWLASPE
FRVVQAEYDDYVGSHNAEETFQNMQDSLSKDKMKRQRKKSPYLISFAMQMRLLTQRGFER
LKGDMAYQTINVCANIIQALVIGSLFYNITESTAGAFSRGGVLFFTLLFNALASMAEISH
SFSQRPIIVKQKSYSFYHPAGEALQALLTDIPGKLVTMICFTLIVYFLTHLNRTAGQFFA
HLFILFVTTQCMTAFFQVLASATPSVEVANSLAGIGILIIVVYSGYMIPTPTMHVWFKWL
NRANPVAYGFEALMANEFHNRVMTCEQIVPAGPDYSGMPESNKVCSFSGSTPGSLVVTGD
NYIKNSYNYSFSHMWRNLGILFAFWMGFVFFNVTFSEYIQYHSSSGDVLLFKRGHIPEEL
QKEGADIDEVIADKAQADDSEKKMDRLLSLDEERDVFTWQNVDYVIPIAGGTRKLLDNVQ
GYVKPGTITALMGESGAGKTTLLNVLSQRINFGVITGDMLVNGRPLDRTFQRRTGYVQQQ
DLHLAESTVRESLIFSARLRQPSFVPDQEKIDYCDKIIKLLGMEAYAESLVGETGRGLNV
EQRKKLSIGVELVAKPSLLLFLDEPTSGLDSQSAWAIVQFLKNLAAAGQAILCTIHQPSA
TLFEEFDRLLLLKKGGQTVYFGDIGKNSNTLVSYFERQGGRKCAPDENPAEYILECIGAG
ATATADGDWHDKWKNSEEYRQTTDEIAKLQQELAQRPQKELDPSLQRKYAAPYMTQLRWV
LRRTQIQFWRSPGYIMAKFMLLIVGGLFIGFSFWDIKFTLSGMQNAIFAVFMITTLSVPL
INQIQSFAFQSRELFEVRESSSNTFHWSCLLFSQFISELPYALIGGTIFYCCVYFPTKLG
TSARVAGYFYFIYAILFNLYYLSFGLWILYFSPDVPSASIITSLMFSFVIAFCGVMQPAS
LMPGFWTFMYKLSPFTYIIQAYVGDVMHDRKITCLPREFSRFNPPSGQTCQEYAGKFLSQ
ATGYLEDPNATTQCGYCPYSVADEFIATVGIKYHYRWRNVGFICAYIIFNICAMVLCYYL
ARVRVWRTGAAIADWKAKRANKKKAASSEKA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG