YALI0F15235g

Overview

Description similar to uniprot|Q8TG89 Saccharomyces cerevisiae YGR280C PXR1 involved in maturation of rRNAs and small nucleolar RNAs
Locus type CDS
Locus tag YALI0F15235g

Location

Species Yarrowia lipolytica Positions 2051177..2052102
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 926 (nuc.)
Previous locus YALI0F15213g Next locus YALI0F15246r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F15235g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F15235gYALI0F15235g_mRNA-001YALI0F15235g_CDS-001

Nucleotide sequence

 

>YALI0F15235g
ATGGGACTGGCTGGAGTGTCGAAGAAGATCAAATACGGCAAGGACCCGCGAAACCTCGGG
TGGTCCAACAACACGGAGCGGTTCGGCCACAAACACATGAGTAAGCTCGGATGGAAGGAC
GGAGAGGGTCTGGGCCATGAGGACCGAAAGGCGCAGAGTATCACGCAAAACATCAAGATT
GTGCTCAAGGACGACAACGTGGGGCTTGGTGCCGGTCTGGCCAAGGCTGATAAGGACGAG
GCCTTTGGTCTGATGGATTTCCAGAAGCTGCTGGGTAAGCTGAACGGACGGGCTCAGGAA
ATTGAAGCTGAGGTTGAGCGACAGCAGAAGGACGTTCTACGAGGCAAGTTTGGCATGGTT
TTTGTGTCCGGCGGTCTTCTCCAGGGAACGATCGAGGAGTTCAACAAGAAGCGAGGGTCC
GAGGCTGTGGAGGAGTCTGACAGTGATTCTGAAGAGTCCGAAAGCGAGTCTGACGACGAC
AAGAAGAGCAGAAAGAGCAGCAAGAAGGAAAAGAAGGATAAGAAGAGCAAAAAGCGAAAG
GCTGATGATGACTCTGATGAGGAGGAGAAGAAGAGCAAGAAGAGCAAGAAGGACAAGAAG
GAAAAGAAGGAAAAGAAGGAAAAGAAGGAAAAGAAGGAAAAGAAGGAAAAGAAGGAAAAG
AAAGAGAAAAAGGATAAGAAAGAGAAAAAGGATAAGAAAGAGAAAAAGGACAAAAAGTCC
GAGTCTCCTACTCCTCACGATGGTATGGAGAAACCCTCTGCATCTTCCACCTCTGCTCTA
CGAGGACGAATGGCTGGACGAGCCAAGTTCATTCGATCCAAGCGAATGGCCGTCATGGAC
GAAAAGAGTCTCAACGAGATTTTCATGGTCAAGAACTGATCCAACCAAAAATATAGATGC
TAACTGATTGAGAGTGAACGTGCATA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F15235g_CDS-001

Protein length: 293 aa.
Product: Essential protein involved in rRNA and snoRNA maturation, putative

>YALI0F15235g_CDS-001 MGLAGVSKKIKYGKDPRNLGWSNNTERFGHKHMSKLGWKDGEGLGHEDRKAQSITQNIKI
VLKDDNVGLGAGLAKADKDEAFGLMDFQKLLGKLNGRAQEIEAEVERQQKDVLRGKFGMV
FVSGGLLQGTIEEFNKKRGSEAVEESDSDSEESESESDDDKKSRKSSKKEKKDKKSKKRK
ADDDSDEEEKKSKKSKKDKKEKKEKKEKKEKKEKKEKKEKKEKKDKKEKKDKKEKKDKKS
ESPTPHDGMEKPSASSTSALRGRMAGRAKFIRSKRMAVMDEKSLNEIFMVKN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG