YALI0F12199g

Overview

Description similar to uniprot|Q12362 Saccharomyces cerevisiae YOL066C (ohnolog of YDL036C)
Locus type CDS
Locus tag YALI0F12199g

Location

Species Yarrowia lipolytica Positions 1606659..1608515
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1857 (nuc.)
Previous locus YALI0F12177g Next locus YALI0F12221g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F12199g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F12199gYALI0F12199g_mRNA-001YALI0F12199g_CDS-001

Nucleotide sequence

 

>YALI0F12199g
ATGCTACACGAGCTGGTGAAAATTCTGACGTTTCGAACCGTGCAACTGGAAGCGATAGAA
TCTGGGCGACTGCTACGACCGCGAGACCGACAAAAGTTTTCGCGAATAGTTTTCTCCATG
CTCTCCAACCGACCGACCAAAAAGGCCAAGGCGTCGCGCGACGAGGCCGGGTTCAAAATG
CGGGCCCAAAAGGTGAAGAATCTGGAGATCAACGGCGACGAGCAGGCCGATGGGGCCCAG
TACGAGCTGAGCGACGGCCTGCGACGTGTCTCACCATACTACTACACCTATCTGACCTAC
TGCAAGCAGCGGTGGAGAGACCGCCAACTGCTGGACATTTTTGCCAACGAATTCAGAGAC
AGAGACGAAAGCTACTACCGATGGGCGATTGAGAACGGCCAGGTGCTGCTCAACGGCAAG
GTGGCCCAGGTGGACTCGGTGGTTCGAAACGGCGACGCCATCCAGCACAGATCGCACAAG
CACGAACCGCCAGTCACCGACCAGGAGATTGACATTGTGCACGAGGATGACGATTTGGTG
GTGATTGACAAGCCGTCGGGGATGCCGGTTCATCCGGCGGGACGATACAGGTTCAACACC
GCCGTCAACATCCTCAAGCACGTGAACGGACTCCATGTTCATCCTTGCAACCGGCTTGAT
CGACTCACCTCCGGCCTCATGTTCATGGCCAAAAACCCCAAGTCCGCTGACAAGTTTGGC
GCCCAGCTGCGAGACCGCCAGGTGCAAAAACAATACGTGGCCCGGGTGGTGGGCAAGTTC
CCCGACGGCGAAATCTCCGTCGACGAAAACTTGTGCACTCTGGACCCCAAAATCGGATTC
AACATCGTCACCACAAAGGTGGACCGAGACCACCACCGGGCTCTGATGGACCGCGCCACC
GAACGGGAAGCCAAAACCGTCTTCAAACGCATTTCCTACGACGGAGAAACGTCCATCGTG
CTGTGCAAACCATACACCGGCCGAACCCACCAGATCCGCGTCCATCTGCAGTTTCTGGGC
CACCCCATCGCCAACGACCCGCTCTACTCGTCGCCGACAATGTGGGGCGAATCCCTGGGC
AAAGGTGGGCTTGAAAACTACGACGTGATGATGAAAATGATCGACGACGTGGGCAAGACC
AAAACCGCCGAATCGTGGTTCTTTCCAGCAGACCCCAACAAACCCCTGGGAGAAGTGCTT
TCGGGCTCCTGTGAAACGTGCAAAACGCCCCTATACACCGACCCGGGCCCCAACGATCTG
TCTCTATGGCTTCATGCCTTCACCTACTCCTCCAAACCAGATGAAGACAACCCCAACGCC
CCCAAGTGGTCCTACTCCACCAAACTGCCAGAATGGGCGTCGCAACCCCACAAAAAGTTC
ATGGACTTGGCGGTGGCCGAGGCAGACAAGTCCGAAGGAACCCCCTCCGCCTTCTGCGTG
GGAGCCGTTCTAGTCAAGGACGGACAAGTGCTGGAAACAGGATTCTCCAGAGAACTGCCC
GGGAACACCCACGCGGAACAATGCGCTCTGGAAAAGTATTTTGCTAAAAACAACGTGTCA
GACGTACCGGAAAACACCGTCATCTACACCACCATGGAGCCCTGCTCCGAACGACTCTCC
GGAAACCTGCCCTGCGTCGACCGAATCCTCAACTCGAGCATCAAGACCGTGTTTGTTGGC
GTTCTGGAACCCGACGACTTCATCAAAGATAACACCTCGTTGGCAAAGCTGGAAAAGGCC
GGAATCAGCTACATTCAGATTCCCGGCTACGAAGACGAGAGTATCAGAATCGCAAAGAAG
GGCCATCCAAAGAACTAGATTGTATATAGAGAAAATGGTATTGGATATGGAGGCTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F12199g_CDS-001

Protein length: 606 aa.
Product: Bifunctional DRAP deaminase tRNA:pseudouridine synthase, putative

>YALI0F12199g_CDS-001 MLHELVKILTFRTVQLEAIESGRLLRPRDRQKFSRIVFSMLSNRPTKKAKASRDEAGFKM
RAQKVKNLEINGDEQADGAQYELSDGLRRVSPYYYTYLTYCKQRWRDRQLLDIFANEFRD
RDESYYRWAIENGQVLLNGKVAQVDSVVRNGDAIQHRSHKHEPPVTDQEIDIVHEDDDLV
VIDKPSGMPVHPAGRYRFNTAVNILKHVNGLHVHPCNRLDRLTSGLMFMAKNPKSADKFG
AQLRDRQVQKQYVARVVGKFPDGEISVDENLCTLDPKIGFNIVTTKVDRDHHRALMDRAT
EREAKTVFKRISYDGETSIVLCKPYTGRTHQIRVHLQFLGHPIANDPLYSSPTMWGESLG
KGGLENYDVMMKMIDDVGKTKTAESWFFPADPNKPLGEVLSGSCETCKTPLYTDPGPNDL
SLWLHAFTYSSKPDEDNPNAPKWSYSTKLPEWASQPHKKFMDLAVAEADKSEGTPSAFCV
GAVLVKDGQVLETGFSRELPGNTHAEQCALEKYFAKNNVSDVPENTVIYTTMEPCSERLS
GNLPCVDRILNSSIKTVFVGVLEPDDFIKDNTSLAKLEKAGISYIQIPGYEDESIRIAKK
GHPKN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG