YALI0F08943g

Overview

Description some similarities with uniprot|C1MZH2 Micromonas pusilla cold-shock protein with RNA binding domain
Locus type CDS
Locus tag YALI0F08943g

Location

Species Yarrowia lipolytica Positions 1248982..1250733
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1752 (nuc.)
Previous locus YALI0F08921g Next locus YALI0F08965g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F08943g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F08943gYALI0F08943g_mRNA-001YALI0F08943g_CDS-001

Nucleotide sequence

 

>YALI0F08943g
CACAGTCTACACCCTTTCAGAAACCGTAGCAGCAGCTCTCGTGGAGACTCTCAACACCCG
CCAACCGCGTCCCCAAAACCAATCAACCCACTCCAGCCACAGGCCCCCGCCCCTTCCGTC
CGGTCACGTGACCTCCTCCGCCGTCCCCCGCGCCCGCCGTCGTCCCGACCTCTGGTCTAC
CTTCCCTCACCCACAACAGGACGTTAGTCACTGCACAAAACCTTAGTGCCACTAGAGACA
CAAAAGCAGGTCAATAGTCGTCTACCACCAGCATTTCAGTTGGCTAACACTACTGCAACA
GCCACACTTGCGTCGCACCAAACCACGCCTGGAAACCTCCTGCTCCCTTAGCATCGCCCC
ACGACCCCTTCCAATGTCGCAGTCGCCACCTGCCTCTGCCAGCAAGTCTCCTCCGGCCAG
TTCGCCACCCCACTCTGAGGCGGACCTGTTGCCCCCCAACGCCTTCTCACTCCACAATGT
AAGTACACCGACTGCCCCCTCTGCGTGCAATCCCTCTAACACAGCTCCCCCAAAACGCCA
CCTGGCGAGGCGTCAAAGATGTCATCAACGACGTGTTCCCCTGCTGGTGCATGGTGCGCA
TCGTGGTGCCCGGAATCGCCAATGTCGAGGTGAAAACCGCCCAGGTGGCGGTCGAGCTGG
CAGCCAAGCTCCAGGGCCACGACATGGACGGATTTGTGCTGGCCACACAGCCGCCGCTGT
CGCCCCCGCAGGCCATGATGCTCCAGCACCAGGCCATGATGCACCACCAGATGCAGATGG
GCATGCATCACCCCATGGCTGTGCCCGGGGTGCACTACAACCAGTACGCCGCCTACCCCC
AATCGCCGCAACCCTACCCCGGGGCACCTCCCCAGTACATGGGCTACATGCCGCAGTACG
TGCCCTTTTACCCCGGCTCGCCCCCCATGACCGACACCTATCTTGCATCGTCCAACGTCC
CCGACAACACCGCCTCCCAAACAGCATCGCCCTCCGCCAACTCTGTAGCGTCGTCAGGCG
CCTCCTCTCTTACTAACTCCCCCATGCCATACTATGTGGCGCCCGTCGCTCCCGATTGGA
CCCAAACCTCGCCCGTGTACAGCATGCCTATGAGTCCCGGCTTCATGCAGTACGGCCATG
TGCCGCGGATGCGTCGCTTTGGTGGCTACGGCGGCTACGGCGGCTACAACGGCAGCTACG
GTGGCGGATACAAGCCGCGAGTCATGAACTTTTCGGATACTCCGATAGACAAGCAGCGGC
TGTTTGTGGGCAACATTCCGTTTGCTACCACATGGTACGAGCTCAAGGCGTATCTGGGCA
GCTGTGGCCCCGTGTCCCATGTTGAGATCCAGACCAACGATGTGGGTGACAGCCTGGGAT
TTGCATTGGTCACGTTTCAAGACGAAGAGACGGCCAGTAAGGCGATTGAGCTGTTCGATG
GAAAAATGTTTGAGGGCCGGGCACTCAAGGTGCATTACGACCGGGTGCCTCCCCGGAAGA
CTTACCACCAGCATCAGAATAATCATCATAATAACCACAGCAGCAACAACCACAACCACA
ATTCCGGCAGCAACCACGGCGGTGCTCCTGCATCGGGCTCTCTGGGCTCTTCTCCTGCAC
CGGCCGTCGCTGCCAATGGCTACAACAGATACAAGGGCTTCAAGCCATTTGTTCCTGGTG
ATGCGGGAAGCCAAGCATGATGGGGAACCAAGCATCGGCATTATTTAATTAAACTAACCT
GTATATCTGCTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F08943g_CDS-001

Protein length: 427 aa.
Product: Conserved hypothetical protein

>YALI0F08943g_CDS-001 MSQSPPASASKSPPASSPPHSEADLLPPNAFSLHNLPQNATWRGVKDVINDVFPCWCMVR
IVVPGIANVEVKTAQVAVELAAKLQGHDMDGFVLATQPPLSPPQAMMLQHQAMMHHQMQM
GMHHPMAVPGVHYNQYAAYPQSPQPYPGAPPQYMGYMPQYVPFYPGSPPMTDTYLASSNV
PDNTASQTASPSANSVASSGASSLTNSPMPYYVAPVAPDWTQTSPVYSMPMSPGFMQYGH
VPRMRRFGGYGGYGGYNGSYGGGYKPRVMNFSDTPIDKQRLFVGNIPFATTWYELKAYLG
SCGPVSHVEIQTNDVGDSLGFALVTFQDEETASKAIELFDGKMFEGRALKVHYDRVPPRK
TYHQHQNNHHNNHSSNNHNHNSGSNHGGAPASGSLGSSPAPAVAANGYNRYKGFKPFVPG
DAGSQA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG