YALI0F04059g

Overview

Description similar to uniprot|Q08601 Saccharomyces cerevisiae YOR197W MCA1 Metacaspase
Locus type CDS
Locus tag YALI0F04059g

Location

Species Yarrowia lipolytica Positions 606127..607601
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1475 (nuc.)
Previous locus YALI0F04037g Next locus YALI0F04081g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F04059g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F04059gYALI0F04059g_mRNA-001YALI0F04059g_CDS-001

Nucleotide sequence

 

>YALI0F04059g
ATGAGCTACCCAGGACAAGGCGGCAACACTTATGGCGGCGGCCCGCCCGGCGGATATGGC
GGATACAACCAGCAGGACCGGTATGGCGGCGGCGGCGGCAACTATGGACCTCCCCAGGGC
CCTCCTCCGGGCCAGTATGGTGGCGGATATGGAGGTCCTGGAGGGGGATACGGAGGTTCG
GGAGGTGGATATGGGCCTCCTCAGGGTCCTCCTCCAGGCCAATACGGAGGTTCGGGAGGT
CCTGGCGGCTATGGACCCCCACAGGGACCCCCTCCTGGGCAAAGGGGCAACTATGGACCT
CCTCAAGGTCCTCCTGGAGGCCAGGGGGGCGGCGGAGGAGGATATGGACACCCCGGAATG
GGCAATCAGGCGCCCCCAGGACAATACGGACAGCCCGGACCGCCCGGACCGCACGGAAAT
CACAACATGCCTCCTCAGGGCAACCAGGCATTTGGAGGCACCCAGGGCTACCATTTCCAG
TACTCCAACTGTTCGGGTAAGAAGAAGGCGTTATTGATTGGCTGCAACTACATTGGCTCC
AAAAACGCGCTGCGAGGCTGTATCAACGACGTGCACAACCTGCAGCGGTACCTGGTGCAG
CGGGCGGGATACAAGCCCGACGACATGGTGATTCTCACCGACGACCAGCGCGACCAGCGG
TCGATCCCCACCAAGCAGAACATTCTGCAGGCGTGCCAGTGGCTGGTCAAGGGCGCGCAG
CCCAACGATTCGCTGGTGTTTCATTTTTCGGGCCACGGCGGCCAGGAAAAGGATGTCGAC
GGCGACGAGGACGATGGCTACGACGAATGCATCTATCCCGTGGACTTCCAACGGGCCGGA
TCCATCATCGACGACGTGCTGCATGACATTCTTGTCAAGTCGCTTCCTCCTGGATGCCGC
CTGACCGCGTTGTTCGACTCGTGCCACTCAGGCACAGCCCTCGATCTGCCCTACGTCTAC
TCCACCAAGGGCATTTTGAAGGAGCCCAACCTGGCCAAGGAGGCCGGACAAGGCCTGTTG
GGTGCTGTGTCGTCCTACGCCCGGGGCGACATCGGAGGCGCTCTGTCGTCCATCATGGGA
ACCGTCAAACAGGCCACCACTGGCTCGGGAGCCAACCAGCGGGCCAAACAGACCAAGACG
GCACCCTGTGACGCCATTTCCATCTCCGGATGCAAGGACAGCCAGACCTCTGCCGACGCC
ATGGAGGGCGGCACCGCCACCGGCGCCATGTCGTTTGCCTTCATCGAGGTTATGACACGT
GACCCCAACCAGAGCTATTTGTCATTGCTGAACAATATGCGGGAGGTTCTGCGGGGCAAA
TATTCACAGAAGCCGCAATTGAGTGCCTCTCATCCTACCGATGTGAACCTCAAGTTCATT
ATGTAGACGGGAGAGGTGGCCATCTGACTTCTCATGTATATCCATATCGTTGACCGACAA
ATGAATTGATGTATGATATATCTAGCTGTTGGAAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F04059g_CDS-001

Protein length: 462 aa.
Product: Metacaspase, putative

>YALI0F04059g_CDS-001 MSYPGQGGNTYGGGPPGGYGGYNQQDRYGGGGGNYGPPQGPPPGQYGGGYGGPGGGYGGS
GGGYGPPQGPPPGQYGGSGGPGGYGPPQGPPPGQRGNYGPPQGPPGGQGGGGGGYGHPGM
GNQAPPGQYGQPGPPGPHGNHNMPPQGNQAFGGTQGYHFQYSNCSGKKKALLIGCNYIGS
KNALRGCINDVHNLQRYLVQRAGYKPDDMVILTDDQRDQRSIPTKQNILQACQWLVKGAQ
PNDSLVFHFSGHGGQEKDVDGDEDDGYDECIYPVDFQRAGSIIDDVLHDILVKSLPPGCR
LTALFDSCHSGTALDLPYVYSTKGILKEPNLAKEAGQGLLGAVSSYARGDIGGALSSIMG
TVKQATTGSGANQRAKQTKTAPCDAISISGCKDSQTSADAMEGGTATGAMSFAFIEVMTR
DPNQSYLSLLNNMREVLRGKYSQKPQLSASHPTDVNLKFIM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG